Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-03-12 |  |
cryo electron tomography of mouse hippocampal CA1 stratum radiatum - dataset 4 [multiple data sets in EER and MRC formats] | Glynn CG, Smith JLRS [Pubmed: 40527314] [DOI: 10.1016/j.jsb.2016.06.024] |
342.3 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after extrusion with a 200 nm filter [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 261.9 GB | — |
| 2026-03-13 |  |
cryo electron tomography of mouse hippocampal CA1 stratum radiatum - dataset 1 [multiple data sets in EER and MRC formats] | Glynn CG, Smith JLRS [Pubmed: 40527314] [DOI: 10.1016/j.jsb.2016.06.024] |
528.5 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of 70% DOPG 30%DPPG vesicles [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 285.9 GB | — |
| 2021-11-15 |  |
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [multiple data sets in MRC format] | Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N [Pubmed: 34114559] [DOI: 10.7554/elife.68946] |
67.8 GB | — |
| 2022-11-18 |  |
A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G [Pubmed: 36452870] [DOI: 10.1016/j.crmeth.2022.100322] |
2.0 TB | — |
| 2025-07-03 |  |
Cryo electron micrographs of DOPC vesicles after extrusion with a 50 nm filter [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS [DOI: 10.1101/2025.01.09.632183] |
183.7 GB | — |
| 2023-11-13 |  |
Test subset: In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [18 tilt series in MRC format] | Kelley R, Zhang X, Obr M, Khavnekar S, Righetto R, Waltz F, Wietrzynski W, Michael A, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
293.7 GB | — |
| 2022-11-23 |  |
Cryo-electron tomograms of RPE1 cells with comprehensive annotation of actin filaments and microtubules [multiple data sets in TIFF and MRC formats] | Cheng DWC, Goetz SK, Mahamid J [Pubmed: 36690741] [DOI: 10.1038/s41592-022-01746-2] |
32.9 GB | — |
| 2020-08-06 |  |
Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [18 multi-frame micrographs composed of 300 frames each in TIFF format] | Peddie CP, Jones ML, Collinson LM | 15.6 GB | — |
| 2020-08-06 |  |
FIB/SEM sample dataset MCB-CLEM IV Weiner [1 multi-frame micrographs composed of 844 frames each in TIFF format] | Weiner A | 2.8 GB | — |
| 2024-01-15 |  |
Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — |
| 2025-06-02 |  |
Rous sarcoma virus frameshifting pseudoknot [multiple data sets in MRC and TIFF formats] | Jones CP, Ferre-D'Amare AR [Pubmed: 40172966] [DOI: 10.1073/pnas.2418418122] |
4.4 TB | — |
| 2019-02-01 |  |
Bdellovibrio electron cryotomography tilt-series acquired by continuous tilting [1 tilt series in MRC format] | Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ [Pubmed: 30639925] [DOI: 10.1016/j.jsb.2018.12.008] |
2.1 GB | — |
| 2023-10-23 |  |
High-throughput electron tomography identifies centriole over-elongation in plasma cell disorders [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G, Goldschmidt H, Müller-Tidow C, Raab MS, John L, Seckinger A, Brobeil A, Dreger P, Tornóczky T, Pajor L, Hegenbart U, Schönland SO, Schwab Y, Krämer A [Pubmed: 37821581] [DOI: 10.1038/s41375-023-02056-y] |
7.7 TB | — |
| 2024-04-17 |  |
Spatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity [multiple data sets in TIFF format] | Parlakgul G | 2.9 TB | — |
| 2019-02-01 |  |
Bdellovibrio bacteriovorus electron cryotomography tilt-series acquired by fast-incremental method [1 tilt series in MRC format] | Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ [Pubmed: 30639925] [DOI: 10.1016/j.jsb.2018.12.008] |
5.2 GB | — |
| 2021-11-16 |  |
Subcellular architecture collodaria photosymbiosis [7 multi-frame micrographs composed of 1000 frames each in TIFF format] | Decelle JD [Pubmed: 34499794] [DOI: 10.1111/1462-2920.15766] |
10.3 GB | — |
| 2024-01-16 |  |
REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis [multiple data sets in DM4 and TIFF formats] | Belevich I, Jokitalo E [Pubmed: 30995177] [DOI: 10.1091/mbc.e18-11-0698] |
8.7 GB | — |
| 2026-03-23 |  |
Cryo electron tomography of yeast FIB-milled lamella after sublimation [657 multi-frame micrographs composed of 6 frames each in MRC format] | Bondy AL, Valentin Gese G, Thersleff T, Hallberg BM | 857.7 GB | — |
| 2026-08-06 |  |
Iota toxin Ib D452A [4073 multi-frame micrographs composed of 52 frames each in TIFF format] | Yamada T, Nakanishi R, Sugita Y, Ninomiya Y, Noda T, Tsuge H | 933.7 GB | — |
| 2019-05-07 |  |
A collection of yeast cell cryo-ET data [1488 tilt series in MRC format] | Gan L, Ng CT, Chen C, Cai S [Pubmed: 27605704] [DOI: 10.1091/mbc.E16-07-0506] |
2.5 TB | — |
| 2023-10-17 |  |
Soft X-ray Cryo Tomography of Trypanosoma [180 reconstructed volumes in MRC format] | Darrow MC [Pubmed: 28246039] [DOI: 10.1016/j.jsb.2017.02.007] |
1.5 GB | — |
| 2026-07-31 |  |
Raw data for cryo-electron tomograms of mitochondria in T cells from lung adenocarcinoma patients after in vitro restimulation [21 tilt series in EER format] | Su L, Pan B, Sang J, Zhang X | 147.6 GB | — |
| 2026-03-12 |  |
cryo electron tomography of mouse hippocampal CA1 stratum radiatum - dataset 5 [multiple data sets in EER and MRC formats] | Glynn CG, Smith JLRS [Pubmed: 40527314] [DOI: 10.1016/j.jsb.2016.06.024] |
122.7 GB | — |
