Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-05-13 | Single particle raw data of falcilysin in the absence of MK-4815 [18180 multi-frame micrographs composed of 765 frames each in EER format] | LIN J.Q., Yan X, Lescar J [Pubmed: 39217277] [DOI: 10.1038/s42003-024-06774-6] |
5.1 TB | 3.1 - 3.5 Å | |
| 2026-07-10 | Human Hemoglobin, Laser Phase Plate TEM, Laser-ON dataset 3 (H3) [245 multi-frame micrographs composed of 16384 frames each in EER format] | Petrov P.N., Zhang J.T., Remis J.P., Axelrod J.A., Chen HC, Hicklin I.K., Sandhaus S, Schnurr C, Glaeser R.M., Mueller H.M. [Pubmed: 42275466] [DOI: 10.1126/science.aeh0665] |
375.7 GB | 3.1 Å | |
| 2026-05-18 | Raw data used for CS polymerase structure determination (CHSY3-CHPF) [12169 multi-frame micrographs composed of 66 frames each in TIFF format] | Dutta P, Cordeiro RL, Friedel-Arboleas M, Bourgeais M, Vallet SD, Weber M, Molinas M, Shu H, Gronset MNN, Miller RL, Boeri Erba E, Wild R [Pubmed: 41298522] [DOI: 10.1038/s41467-025-66787-5] |
2.3 TB | 3.0 Å | |
| 2026-06-04 | An auto inhibitory loop in the MiDAC histone deacetylase complex [11093 multi-frame micrographs composed of 50 frames each in TIFF format] | Fairall L, Schwabe JWR [Pubmed: 41290615] [DOI: 10.1038/s41467-025-65472-x] |
2.3 TB | 2.75 - 2.92 Å | |
| 2026-07-17 | Cryo-electron tomography reveals paracellular claudin-15 pores at the tight junction [multiple data sets in MRC format] | Demchenko EA, McGuinness S, Wood S, Kainov J, Pappas V, Austin J, Hyatt D, Khalili-Araghi F, Shen L, Weber CR [Pubmed: 42343561] [DOI: 10.1016/j.bpj.2026.06.027] |
831.4 GB | — | |
| 2026-05-20 | Cryo-EM structures of alpha5beta1 integrin in complex with NeoNectin [multiple data sets in TIFF and MRC formats] | Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG [Pubmed: 40489013] [DOI: 10.1002/adma.202500872] |
382.1 GB | 3.19 Å | |
| 2026-06-21 | Single Particle Cryo-EM Structure of Thermotoga maritima Threonylcarbamoyl Transfer Complex (TsaB2D) in Complex with Thermotoga maritima tRNA(LYS) [multiple data sets in TIFF and MRC formats] | Swairjo MA, Kutchuashvili A [Pubmed: 42312490] [DOI: 10.1093/nar/gkag599] |
3.7 TB | 3.2 Å | |
| 2026-06-28 | Single Particle Cryo-EM Structure of Thermotoga maritima Threonylcarbamoyl Transfer Complex (TsaB2D) in Complex with Escherichia coli tRNA(THR) [multiple data sets in TIFF and MRC formats] | Swairjo MAS, Kutchuashvili AK [Pubmed: 42312490] [DOI: 10.1093/nar/gkag599] |
4.7 TB | 3.2 Å | |
| 2026-05-13 | Single particle raw data of falcilysin in the presence of MK-4815 [6764 multi-frame micrographs composed of 783 frames each in EER format] | LIN J.Q., Yan X, Lescar J [Pubmed: 39217277] [DOI: 10.1038/s42003-024-06774-6] |
1.9 TB | 2.7 - 3.2 Å | |
| 2026-09-11 | Experimentally-grounded benchmark datasets for cryoEM heterogeneous reconstruction methods with engineered Cas9 complexes [multiple data sets in EER and MRCS formats] | Grassetti AV, Kinman LF, Davis JH [DOI: 10.64898/2026.05.04.721978] |
33.2 TB | 2.33 - 3.09 Å | |
| 2026-06-24 | Structure of the ribosome with elongation factor G trapped in the pretranslocation state [stack of 1341961 particles in MRC format] | Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N [Pubmed: 24324137] [DOI: 10.1073/pnas.1311423110] |
512.1 GB | 5.9 - 7.6 Å | |
| 2026-07-31 | Raw data for cryo-electron tomograms of mitochondria in T cells from lung adenocarcinoma patients after in vitro restimulation [21 tilt series in EER format] | Su L, Pan B, Sang J, Zhang X | 147.6 GB | — | |
| 2026-08-17 | Structures of asymmetric immature particles of tick-borne encephalitis virus solved by SPA [11246 multi-frame micrographs composed of 40 frames each in TIFF format] | Fuzik T, Plevka P [Pubmed: 42397903] [DOI: 10.1126/sciadv.aee4765] |
1.8 TB | 3.57 - 10.96 Å | |
| 2026-08-17 | Structures of asymmetric immature particles of tick-borne encephalitis virus solved by STA [8201 multi-frame micrographs composed of 4 frames each in TIFF format] | Fuzik T, Plevka P [Pubmed: 42397903] [DOI: 10.1126/sciadv.aee4765] |
214.8 GB | 4.24 Å | |
| 2026-06-02 | Structures of asymmetric mature particles of tick-borne encephalitis virus solved by SPA [13122 multi-frame micrographs composed of 40 frames each in TIFF format] | Fuzik T, Plevka P | 2.1 TB | 5.1 Å | |
| 2026-06-12 | Engineered nanobody 1B2 bound to the acidic patch of the nucleosome [multiple data sets in TIFF and MRC formats] | Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK [DOI: 10.1093/nar/gkag693] |
4.9 TB | 3.17 Å | |
| 2026-06-10 | Engineered nanobody 1G1 bound to the acidic patch of the nucleosome [multiple data sets in TIFF and MRC formats] | Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK [DOI: 10.1093/nar/gkag693] |
4.0 TB | 3.1 Å | |
| 2026-06-25 | In situ cryo-ET dataset of primary human T cells [multiple data sets in MRC format] | Kreysing JP, Penzo C, Lusic M, Beck M [Pubmed: 42399220] [DOI: 10.1101/2025.04.09.647790] |
332.0 GB | 6.8 - 7.4 Å | |
| 2026-06-26 | Cryo-EM structure of rat SLCO2A1 bound to fentiazac. [12155 multi-frame micrographs composed of 40 frames each in TIFF format] | Joshi C, Newstead S [Pubmed: 41862483] [DOI: 10.1038/s41467-026-70227-3] |
2.2 TB | 3.1 Å | |
| 2026-06-04 | Cryo Electron Microscopy micrographs of MRP2 bound to Leukotriene C4 [18196 multi-frame micrographs composed of 36 frames each in EER format] | Koide EK, Pietz HLP, Beltran JB, Chen JC [Pubmed: 39779684] [DOI: 10.1038/s41467-024-55810-w] |
9.3 TB | 2.75 Å | |
| 2026-05-26 | Raw data for single-particle cryo-EM analysis of soluble P. aeruginosa PA3214 [6463 multi-frame micrographs composed of 50 frames each in TIFF format] | Giacometti SI, Coudray N, Redler RL, Bhabha G, Ekiert DC [DOI: 10.64898/2026.05.09.724024] |
2.4 TB | 2.67 Å | |
| 2026-05-31 | Raw data for single-particle cryo-EM analysis of P. aeruginosa PA3214 in complex with the C-terminal peptide of PA3213 [multiple data sets in TIFF format] | Giacometti SI, Coudray N, Bhabha G, Ekiert DC [DOI: 10.64898/2026.05.09.724024] |
2.8 TB | 2.7 - 12.0 Å | |
| 2026-06-08 | In extracto cryo-EM reveals eEF2 as a major hibernation factor on 60S and 80S particles [24552 micrographs in MRC format] | Zahra Seraj XZ, Ximena Zottig XZ, Chun-Ying Huang CYH, Anna B Loveland ABL, Stephen Diggs SD, Emily Sholi ES [Pubmed: 41394757] [DOI: 10.7554/eLife.110114.2] |
2.1 TB | — | |
| 2026-09-01 | Cryo-EM of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3 (dataset 1) [multiple data sets in TIFF and MRC formats] | Zuo Y, Han L, Ferguson KM [Pubmed: 42475585] [DOI: 10.1073/pnas.2602436123] |
3.2 TB | 2.37 Å | |
| 2026-09-01 | Cryo-EM of the C. elegans EGFR (LET-23) extracellular region bound to LIN-3 (dataset 2) [multiple data sets in TIFF and MRC formats] | Zuo Y, Han L, Ferguson KM [Pubmed: 42475585] [DOI: 10.1073/pnas.2602436123] |
2.0 TB | 2.81 Å |