Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-02-12 |  |
Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
6.8 GB | — |
| 2019-09-27 |  |
Cryo-EM structure of TMV in water [62 multi-frame micrographs composed of 20 frames each in TIFF format] | Weis F, Beckers M, von der Hocht I, Sachse C [Pubmed: 31535454] [DOI: 10.15252/embr.201948451] |
6.8 GB | 1.9 Å |
| 2021-04-30 |  |
FIB-SEM of Tuwongella immobilis - a species of the Planctomycetes phylum [1 multi-frame micrographs composed of 464 frames each in TIFF format] | Andersson SGE, Odelgard A, Dyrhage K, Mahajan M, Seeger C [DOI: 10.3389/fmicb.2021.643045] |
6.7 GB | — |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly [670 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
6.7 GB | — |
| 2023-02-28 |  |
Cryo serial FIB/SEM of HeLa cells [46 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
6.7 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — |
| 2025-11-14 |  |
Cryo-tomography of 1.4 nm-HAN-594 labeled nucleosomes inside cells (ExoSloNano) [41 tilt series in TIFF format] | Young LN, Sherard A, Narasimhan M, Flaherty WA, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M | 6.5 GB | — |
| 2021-08-27 |  |
Cryo-electron tomography of JCVI-Syn3A (large cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.5 GB | — |
| 2025-06-09 |  |
Scan 6 according to material & methods [972 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2022-01-12 |  |
In vivo architecture of the polar organizing protein Z (PopZ) meshwork in the Alphaproteobacteria Magnetospirillum gryphiswaldense and Caulobacter crescentus [multiple data sets in MRC format] | Toro-Nahuelpan M, Plitzko JM, Schüler D, Pfeiffer D [Pubmed: 34971672] [DOI: 10.1016/j.jmb.2021.167423] |
6.4 GB | — |
| 2025-10-15 |  |
Cryo-electron tomography of mitotic chromosomes isolated from chicken DT-40 cells with annotated nucleosome positions [multiple data sets in TIFF, MRCS and MRC formats] | Patra G, Harastani M, Eltsov M [Pubmed: 41044063] [DOI: 10.1038/s41467-025-63895-0] |
6.4 GB | 12.79 - 12.89 Å |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina – a 3D electron microscopic study -Scan 1 [1009 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2021-11-30 |  |
Entropy Regularized Deconvolution of Cellular Cryo-Transmission Electron Tomograms [3 tilt series in MRC format] | Croxford MW, Elbaum ME, Arigovindan M, Kam Z, Agard DA, Villa E, Sedat J [Pubmed: 34876518] [DOI: 10.1073/pnas.2108738118] |
6.4 GB | — |
| 2021-08-20 |  |
Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.4 GB | — |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor bafilomycin A [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 6.3 GB | 4.7 - 7.1 Å |
| 2018-07-05 |  |
Cryo-EM structure of alpha-synuclein fibrils [118 multi-frame micrographs composed of 50 frames each in MRC format] | Guerrero-Ferreira R, Taylor NM, Mona D, Ringler P, Lauer ME, Riek R, Britschgi M, Stahlberg H [Pubmed: 29969391] [DOI: 10.7554/elife.36402] |
6.3 GB | — |
| 2021-04-14 |  |
Cryo electron tomography of the reconstituted TRIM72-proteoliposomes on both positive and negative curvatures. [multiple data sets in MRC format] | Park SH, Song HK [Pubmed: 37770719] [DOI: 10.1038/s41594-023-01111-7] |
6.2 GB | — |
| 2025-11-06 |  |
SEM images of Mouse brain tissue sample [720 reconstructed volumes in TIFF format] | Slamková D | 6.0 GB | — |
| 2021-09-10 |  |
Structural analysis of receptors and actin polarity in platelet protrusions [3 reconstructed volumes in EM format] | Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O [Pubmed: 34504018] [DOI: 10.1073/pnas.2105004118] |
6.0 GB | 26.6 Å |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 and pentavalent OD [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.9 GB | — |
| 2025-03-24 |  |
Array Tomography of Pdzd8 cKO and Fkbp8 KD MEF [multiple data sets in PNG format] | Hirabayashi Y, Nakamura K | 5.9 GB | — |
| 2021-04-14 |  |
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell (tilt series) [1 tilt series in MRC format] | Cuellar LK, Schaffer M, Martinez-Sanchez A, Plitzko JM, Foerster F, Engel BD [Pubmed: 28938114] [DOI: 10.1016/j.cell.2017.08.008] |
5.8 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Rhodospirillum rubrum [43 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.7 GB | — |
| 2022-05-31 |  |
FIB-SEM of U2OS cell at leading edge of a wound assay, non-LPA stimulated, non-polarized [998 multi-frame micrographs composed of 1 frames each in TIFF format] | Costa J, Pinto A, Machado P | 5.7 GB | — |
| 2018-03-09 |  |
Apoferritin tutorial dataset for cisTEM [20 multi-frame micrographs composed of 50 frames each in MRC format] | Grant T, Rohou A, Grigorieff N [Pubmed: 29513216] [DOI: 10.7554/elife.35383] |
5.5 GB | — |
