Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-04-18 |  |
Single particle cryoEM of mouse protocadherin gamma B6 [multiple data sets in MRC format] | Brasch J, Goodman KM, Potter CS, Carragher B, Honig B, Shapiro L, Noble AJ, Mannepalli S, Bahna F, Rapp M, Dandey VP, Bepler T, Berger B, Maniatis T [Pubmed: 30971825] [DOI: 10.1038/s41586-019-1089-3] |
438.8 GB | 35.0 Å |
| 2019-04-18 |  |
Single particle cryo electron tomography of mouse protocadherin gamma B6 [multiple data sets in MRC format] | Brasch J, Goodman KM, Noble AJ, Mannepalli S, Bahna F, Rapp M, Dandey VP, Bepler T, Berger B, Maniatis T, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 30971825] [DOI: 10.1038/s41586-019-1089-3] |
384.1 GB | 35.0 Å |
| 2025-10-09 |  |
Cryo-ET of S. cerevisiae Not4Δ Nup188::GFP Nup170::mars cells [multiple data sets in MRC format] | Sachweh J, Beck M [Pubmed: 40829587] [DOI: 10.1016/j.cell.2025.07.025] |
176.6 GB | 35.3 - 46.4 Å |
| 2023-02-15 |  |
Structural basis of a transcription pre-initiation complex on a divergent promoter [55 tilt series in TIFF format] | Gorbea Colón JJ, Palao L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K [Pubmed: 36731470] [DOI: 10.1016/j.molcel.2023.01.011] |
105.8 GB | 36.0 Å |
| 2021-04-14 |  |
DNA origami signposts for identifying proteins on cell membranes by electron cryotomography [2 tilt series in MRC format] | Silvester E, Vollmer B, Pražák V, Vasishtan D, Machala EA, Whittle C, Black S, Bath J, Turberfield AJ, Grünewald K, Baker LA [Pubmed: 33606980] [DOI: 10.1016/j.cell.2021.01.033] |
38.8 MB | 36.44 Å |
| 2025-01-24 |  |
Cryo-ET of Dictyostelium discoideum in distilled H2O (hypoosmotic stress) [59 tilt series in MRC format] | Hoffmann PC, Beck M [Pubmed: 39729993] [DOI: 10.1016/j.molcel.2024.11.038] |
241.1 GB | 37.0 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 1.03 mrad [29 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
262.0 MB | 37.2 Å |
| 2020-12-02 |  |
Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility. [127 tilt series in MRC format] | Grotjahn D.A, Lander G.C, Chowdhury S [Pubmed: 29416113] [DOI: 10.1038/s41594-018-0027-7] |
200.1 GB | 38.0 Å |
| 2016-01-27 |  |
Cryo-electron tomogram of Chlamydia trachomatis with type III secretion system in contact with HeLa cell [1 class averages in MRC format] | Nans A, Kudryashev M, Saibil HR, Hayward RD [Pubmed: 26656452] [DOI: 10.1038/ncomms10114] |
13.6 GB | 38.0 Å |
| 2025-02-24 |  |
Cryo-ET of Dictyostelium discoideum in 0.4 M sorbitol (hyperosmotic stress) [59 tilt series in MRC format] | Hoffmann PC, Beck M [Pubmed: 39729993] [DOI: 10.1016/j.molcel.2024.11.038] |
332.1 GB | 38.0 Å |
| 2025-12-07 |  |
Cryo electron tomography of wild-type Drosophila nephrocytes [multiple data sets in MRC format] | Moser D, Lang K, Birtasu AN, Grahammer F, Helmstaedter M, Scheffer MP, Hermle T, Frangakis AF [DOI: 10.1038/s41467-025-64347-5] |
1.5 TB | 38.0 Å |
| 2024-02-08 |  |
Cryo electron tomography of whole mitochondria and released crista membranes isolated from Caenorhabditis elegans [multiple data sets in MRC format] | Buzzard E, McLaren M, Gold VAM [Pubmed: 38164968] [DOI: 10.1042/BCJ20230450] |
159.0 GB | 38.6 Å |
| 2022-11-11 |  |
Cryo-electron tomography of microtubules assembled in Xenopus egg cytoplasmic extracts [6 tilt series in MRC format] | Guyomar C, Bousquet C, Ku S, Heumann J, Guilloux G, Gaillard N, Heichette C, Duchesne L, Steinmetz MO, Gibeaux R, Chrétien D [Pubmed: 36503602] [DOI: 10.7554/eLife.83021] |
12.1 GB | 43.3 Å |
| 2022-11-14 |  |
Cryo-electron tomography of microtubules assembled from purified porcine brain tubulin in the presence of GMPCPP [8 tilt series in MRC format] | Guyomar C, Bousquet C, Ku S, Heumann J, Guilloux G, Gaillard N, Heichette C, Duchesne L, Steinmetz MO, Gibeaux R, Chrétien D [Pubmed: 36503602] [DOI: 10.7554/eLife.83021] |
76.1 GB | 43.5 Å |
| 2025-05-22 |  |
Cryo-ET datasets (1 and 2) of dormant microporidian spores from Encephalitozoon intestinalis [multiple data sets in TIFF and MRC formats] | Usmani M, Coudray N, Raghu R, Ramchandani H, Bobe D, Kopylov M, Zhong ED, Ekiert DC, Bhabha G [Pubmed: 39026755] [DOI: 10.1101/2024.07.13.603322] |
1.3 TB | 44.0 - 70.0 Å |
| 2024-01-16 |  |
Cryo Electron tomography of germinated polar tubes from Vairimorpha necatrix [multiple data sets in MRC format] | Sharma H, Jespersen N, Ehrenbolger K, Carlson L.A., Barandun J [DOI: 10.1101/2023.05.31.543061] |
94.1 GB | 46.0 Å |
| 2022-04-19 |  |
In situ architecture of the lipid transport protein VPS13C at ER-lysosomes membrane contacts [5 tilt series in MRC format] | Cai S [Pubmed: 35858323] [DOI: 10.1073/pnas.2203769119] |
29.5 GB | 47.0 Å |
| 2017-07-14 |  |
Tilt-series for the electron cryotomogram of Vibrio cholerae O395 N1 [16 tilt series in MRC format] | Chang YW, Kjaer A, Ortega DR, Kovacikova G, Sutherland JA, Rettberg LA, Taylor RK, Jensen GJ [Pubmed: 28165453] [DOI: 10.1038/nmicrobiol.2016.269] |
51.3 GB | 50.0 Å |
| 2018-01-03 |  |
Structure of the Z-disk isolated from the indirect flight muscle of the honey bee [96 class averages in MRC format] | Rusu M, Hu Z, Taylor KA, Trinick J [Pubmed: 28733815] [DOI: 10.1007/s10974-017-9477-5] |
3.0 GB | 60.0 Å |
| 2014-06-19 |  |
Cryo-electron tomography average of an C1-IgG complex [27 class averages in MRC format] | Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI [Pubmed: 24626930] [DOI: 10.1126/science.1248943] |
10.8 GB | 66.0 Å |
| 2018-02-08 |  |
Tilt-series of salmonella enterica wild-type bacterial flagellar motor [1 tilt series in MRC format] | Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR [Pubmed: 26976588] [DOI: 10.1073/pnas.1518952113] |
328.0 MB | 69.4 Å |
| 2026-08-07 |  |
FIB-SEM image volumes of dinoflagellate cells from: Symbiodinium microadriaticum, Fugacium kawagutii, Breviolum minutum, and Crypthecodinium cohnii [multiple data sets in TIFF format] | Philipp L, Weber SC [DOI: 10.64898/2026.08.10.743404] |
271.3 GB | — |
| 2026-06-08 |  |
Representative electron micrographs of the GAS muscle in Floxed and mLDHA KO mice. Abnormal mitochondria and sarcoplasmic reticula are indicated by white and black arrows, respectively. [7 multi-frame micrographs composed of 1 frames each in TIFF format] | Li Y, Xue LM, Wang FJ, Wang Y, Sun YJ, Niu ZM, Liu SN, Yan Y, Shen SY, Zhang KL, Nie CZP, Fan MC, Ma M, Wu YT, Yang BR, Jun Du J, Zhou B, Zhang D, Chow BKC, Zhang L, Qian HF, Chen L, Ying H, Wang L | 68.3 MB | — |
| 2021-11-15 |  |
Arrangements of proteins at reconstituted synaptic vesicle fusion sites depend on membrane separation. [multiple data sets in MRC format] | Ginger L, Malsam J, Sonnen A.F.P., Morado D, Scheutzow A, Söllner T.H., Briggs J.A.G. [Pubmed: 32860428] [DOI: 10.1002/1873-3468.13916] |
70.0 GB | — |
| 2025-04-14 |  |
3x3 tiled montage tomogram of a yeast lamella imaged with a square electron beam [279 tilt series in TIFF format] | Chua EYD, Alink LM, Kopylov M, Johnston J, Eisenstein F, de Marco A [Pubmed: 38238558] [DOI: 10.1038/s41592-023-02161-x] |
58.4 GB | — |
