Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, access to some data files is currently unavailable.
The period will be extended due to a serious problem.
We apologize for any inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-09-24 |  |
'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.1 TB | 5.44 Å |
| 2025-12-08 |  |
.zarr file of a tomographic scan of a mouse skull [1024 reconstructed volumes in BIG DATA VIEWER HDF5 format] | Haberthür D | 2.6 GB | — |
| 2022-11-29 |  |
1.42 Angstrom Apoferritin structure determined using G1 Titan krios S-FEG operated at 300kV, zero loss imaging using Gatan BioQuantum energy filter operated at 10eV slit width and imaged using K2 camera. [multiple data sets in MRC format] | Venugopal H | 668.6 GB | 1.42 Å |
| 2024-06-12 |  |
1.6Å Apoferritin from 200kV Glacios with Selectris Falcon 4 [4984 multi-frame micrographs composed of 371 frames each in EER format] | Koh A, Khavnekar S, Yang W, Karia D, Cats D, van der Ploeg R, Grollios F, Raschdorf O, Kotecha A, Němeček D [Pubmed: 35377368] [DOI: 10.3791/63519] |
754.4 GB | 1.635 Å |
| 2025-12-17 |  |
1.7 A structure of conventional mouse heavy chain Apoferritin [935 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
370.1 GB | 1.7 Å |
| 2025-12-18 |  |
1.8 A structure of SiO2-sealed and revitrified (210 us) mouse heavy chain Apoferritin [8398 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
2.6 TB | 1.8 Å |
| 2020-06-26 |  |
1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope [4949 multi-frame micrographs composed of 40 frames each in TIFF format] | Merk A, Fukumura T, Zhu X, Darling JE, Grisshammer R, Ognjenovic J, Subramaniam S [Pubmed: 32695410] [DOI: 10.1107/S2052252520006855] |
1.1 TB | 1.8 Å |
| 2021-03-19 |  |
1.93 A cryo-EM structure of streptavidin [2277 multi-frame micrographs composed of 70 frames each in TIFF format] | Hiraizumi M, Yamashita K, Nisihzawa T, Kikkawa M, Nureki O | 373.1 GB | 1.93 Å |
| 2021-06-09 |  |
120kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.60 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.2 GB | 0.6 Å |
| 2020-10-23 |  |
170314, Five-day-old Col-0 Arabidopsis thaliana root, phloem pole unloading zone (339-381 um from the root tip) [multiple data sets in MRC format] | Paterlini A, Belevich I, Jokitalo E, Helariutta Y [Pubmed: 31182845] [DOI: 10.1038/s41477-019-0429-5] |
43.2 GB | — |
| 2020-11-18 |  |
2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM [2558 multi-frame micrographs composed of 50 frames each in MRC format] | Moriya T, Adachi N, Sato Y, Arakawa T, Kawasaki M, Yamada C, Fushinobu S, Senda T [Pubmed: 32775998] [DOI: 10.1016/j.yjsbx.2020.100030] |
1.7 TB | 2.05 - 2.24 Å |
| 2024-06-13 |  |
2.08A Apoferritin Structure Solved Using an Indirect Scintillator-Coupled CMOS Detector at 300 kV [1893 multi-frame micrographs composed of 23 frames each in MRCS format] | Aramaki S, Yoshida Y, Tanihara T, Oyama K, Otsuki K, Terada Y, Matsunaga N, Ohdo S, Mayanagi K | 6.3 TB | 2.08 Å |
| 2022-11-15 |  |
2.1 Å resolution structure of β-galactosidase obtained from Glacios equipped with Falcon 3 [multiple data sets in TIFF format] | Merk A, Darling JE, Grisshammer R, Ognjenović J | 4.8 TB | 2.1 Å |
| 2022-03-14 |  |
2.1Å T20S Proteosome from 200kV Glacios with Selectris Falcon 4 [4075 multi-frame micrographs composed of 854 frames each in EER format] | Koh FA, Khavnekar K, Kotecha A [Pubmed: 35377368] [DOI: 10.3791/63519] |
1.5 TB | 2.1 Å |
| 2016-04-15 |  |
2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor [multiple data sets in MRC format] | Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S [Pubmed: 25953817] [DOI: 10.1126/science.aab1576] |
631.2 GB | 2.2 Å |
| 2022-04-01 |  |
2.3 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state [multiple data sets in TIFF, MRC and MRCS formats] | Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP [Pubmed: 35173352] [DOI: 10.1038/s41594-021-00719-x] |
4.7 TB | 2.3 - 2.9 Å |
| 2025-12-12 |  |
2.3 A structure of the SiO2-sealed and revitrified (150 us) E.coli 50S ribosomal subunit [11896 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
4.7 TB | 2.3 Å |
| 2020-05-26 |  |
2.3 Angstrom cryo-EM reconstructions of HemQ from Geobacillus [258 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.4 TB | 2.32 Å |
| 2025-12-10 |  |
2.4 A structure of the SiO2-sealed and revitrified (30 us) E.coli 50S ribosomal subunit [10535 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.7 TB | 2.4 Å |
| 2020-05-27 |  |
2.6 Angstrom cryo-EM reconstructions of HemQ from Geobacillus in the presence of substantial aberrations [257 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.3 TB | 2.6 Å |
| 2024-06-13 |  |
2.6A b-Galactosidase Structure Solved Using an Indirect Scintillator-Coupled CMOS Detector at 300 kV [11684 multi-frame micrographs composed of 23 frames each in MRC format] | Aramaki S, Yoshida Y, Tanihara T, Oyama K, Otsuki K, Terada Y, Matsunaga N, Ohdo S, Mayanagi K | 4.1 TB | 2.62 Å |
| 2025-12-10 |  |
2.7 A structure of the SiO2-sealed and revitrified (300 us) E.coli 50S ribosomal subunit [13133 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.8 TB | 2.7 Å |
| 2020-05-27 |  |
2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations [202 multi-frame micrographs composed of 200 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.0 TB | 2.7 Å |
| 2021-06-09 |  |
200kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.65 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.5 GB | 0.65 Å |
| 2014-01-03 |  |
2D crystal images of the potassium channel MloK1 with and without cAMP ligand [multiple data sets in TIFF format] | Kowal J, Chami M, Baumgartner P, Arheit M, Chiu P-L, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H [Pubmed: 24469021] [DOI: 10.1038/ncomms4106] |
11.6 GB | 7.0 Å |
