Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-07-04 | Single-Particle Cryo-EM of Apoferritin at Various Tilts [multiple data sets in TIFF, MRC and MRCS formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
302.1 GB | 2.2 - 2.5 Å | |
| 2024-06-16 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) [ three datasets, in TIF format] [multiple data sets in TIFF format] | Zhao Y, Rai J, Li H [Pubmed: 37595043] [DOI: 10.1126/sciadv.adg8190] |
16.0 TB | 2.2 - 2.87 Å | |
| 2025-10-27 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) [5053 multi-frame micrographs composed of 29 frames each in TIFF format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
3.5 TB | 2.2 Å | |
| 2025-10-28 | E. coli 70S ribosome complex (Unmethylated 16S A1408 + arbekacin) [17071 micrographs in MRC format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
1.5 TB | 2.2 Å | |
| 2024-09-06 | cryo electron microscopy unaligned movie frames for single particle analysis of the Escherichia coli 70S ribosome with Paenilamicin B2 [7638 multi-frame micrographs composed of 1050 frames each in EER format] | Koller TO, Berger MJ, Morici M, Beckert B [Pubmed: 38826346] [DOI: 10.1101/2024.05.21.595107] |
4.3 TB | 2.2 - 2.4 Å | |
| 2026-04-07 | Cryo-EM of connexin-46/50 in DMPC nanodiscs at low pH (Collection #1) [7071 multi-frame micrographs composed of 55 frames each in TIFF format] | Jarodsky JM, Myers JB, Reichow SL [Pubmed: 31221961] [DOI: 10.1038/s41598-019-44978-7] |
2.8 TB | 2.2 - 13.08 Å | |
| 2025-02-04 | Cryo-EM of Tetrahymena ribozyme [multiple data sets in TIFF and MRC formats] | Kretsch RC, Li S, Pintilie G, Palo M, Case D, Zhang K, Das R, Chiu W [Pubmed: 40068818] [DOI: 10.1038/s41586-025-08855-w] |
3.7 TB | 2.2 - 2.31 Å | |
| 2016-04-15 | 2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor [multiple data sets in MRC format] | Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S [Pubmed: 25953817] [DOI: 10.1126/science.aab1576] |
631.2 GB | 2.2 Å | |
| 2016-11-10 | Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å | |
| 2024-07-12 | UFM1 ribosome E3 ligase complex bound to the 60S ribosomal subunit [multiple data sets in EER and MRC formats] | Makhlouf L [Pubmed: 38383789] [DOI: 10.1038/s41586-024-07093-w] |
22.6 TB | 2.2 - 3.2 Å | |
| 2022-11-11 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments [10874 multi-frame micrographs composed of 42 frames each in TIFF format] | Yang Y, Shi Y, Schweighauser M, Zhang X, Kotecha A, Murzin AG, Garringer HJ, Cullinane PW, Saito Y, Foroud T, Warner TT, Hasegawa K, Vidal R, Murayama S, Revesz T, Ghetti B, Hasegawa M, Lashley T, Scheres SHW, Goedert M [Pubmed: 36108674] [DOI: 10.1038/s41586-022-05319-3] |
1.2 TB | 2.2 Å | |
| 2021-03-12 | Beta-galactosidase in complex with PETG [562 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
720.1 GB | 2.2 Å | |
| 2024-04-17 | CryoEM movies of IAPP-S20G timecourse (22 week, FT14) [4373 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson M, Xu Y, Thacker D, Taylor AIP, Fisher DG, Gallardo RU, Radford SE, Ranson NA [Pubmed: 38134875] [DOI: 10.1016/j.cell.2023.11.025] |
602.0 GB | 2.2 - 3.1 Å | |
| 2023-02-14 | Microbacterium phage Oxtober96 [10437 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
2.7 TB | 2.2 Å | |
| 2024-03-25 | Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format] | Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS [Pubmed: 37296134] [DOI: 10.1038/s41467-023-39140-x] |
738.4 GB | 2.2 Å | |
| 2021-05-25 | structure of potato virus X, the prototype of the Alphaflexiviridae family [3024 multi-frame micrographs composed of 40 frames each in MRC format] | Grinzato A, Kandiah E, Zanotti G [Pubmed: 32203412] [DOI: 10.1038/s41589-020-0502-4] |
6.6 TB | 2.2 Å | |
| 2022-11-14 | Cryo-EM structure of streptavidin on ultraflat graphene film [2371 multi-frame micrographs composed of 32 frames each in MRCS format] | Zheng LM, Liu N, Wang HW, Peng HL | 685.7 GB | 2.2 Å | |
| 2024-08-13 | Alligator haemoglobin in deoxy form [multiple data sets in TIFF format] | Takahashi K, Lee Y, Nishizawa T, Tame JRH [Pubmed: 39090102] [DOI: 10.1038/s41467-024-49947-x] |
1.9 TB | 2.2 Å | |
| 2025-07-10 | Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase with NADPH under turnover conditions [22290 multi-frame micrographs composed of 1036 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
9.4 TB | 2.2 Å | |
| 2023-08-18 | Initiation complex consisting of E. coli 70S ribosome with Am6AA mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [7172 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
2.7 TB | 2.21 - 2.81 Å | |
| 2025-08-13 | Cryo-EM structures of AceCas9 [multiple data sets in TIFF format] | Das A, Rai J, Roth MO, Shu Y, Medina ML, Barakat MR, Li H [Pubmed: 38348449] [DOI: 10.1038/s41929-023-01031-1] |
6.3 TB | 2.21 - 2.88 Å | |
| 2023-04-13 | Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2 [18846 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang K, Brunger AT [Pubmed: 36122200] [DOI: 10.1073/pnas.2210990119] |
4.6 TB | 2.22 Å | |
| 2021-03-29 | Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E [multiple data sets in MRC and MRCS formats] | Chandler-Bostock R, Mata CP, Bingham RJ, Dykeman EC, Meng B, Tuthill TJ, Rowlands DJ, Ranson NA, Twarock R, Stockley PG [Pubmed: 33370422] [DOI: 10.1371/journal.ppat.1009146] |
635.4 GB | 2.23 Å | |
| 2023-06-29 | E. coli 50S ribosome bound to compound streptogramin analog SAB001 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Fraser JS, Lee DJ, Seiple IB | 1.6 TB | 2.23 Å | |
| 2025-04-09 | CryoEM structure of cyclised H-pilus [multiple data sets in TIFF format] | Ishimoto N, Beis K | 112.8 GB | 2.24 Å |