Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-11-04 |  |
Tilt series of mouse heavy chain apoferritin acquired on Krios G4 equipped with SelectrisX and Falcon4i [3300 multi-frame micrographs composed of 153 frames each in EER format] | Obr M, Yang W, Karia D, Koh FA, Kotecha A | 131.0 GB | 1.6 - 1.8 Å |
| 2023-08-18 |  |
Mouse heavy chain apoferritin in vitreous ice after plunge-freezing [4745 multi-frame micrographs composed of 784 frames each in EER format] | Bongiovanni G, Harder OF, Voss JM, Drabbels M, Lorenz UJ [Pubmed: 37219589] [DOI: 10.1107/S2059798323003431] |
1023.1 GB | 1.61 Å |
| 2018-10-25 |  |
Cryo-EM structure of mouse heavy-chain apoferritin at 1.62 A [1647 multi-frame micrographs composed of 59 frames each in MRC format] | Danev R, Yanagisawa H, Kikkawa M [Pubmed: 31078399] [DOI: 10.1016/j.tibs.2019.04.008] |
1.2 TB | 1.62 Å |
| 2024-04-17 |  |
Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes [16285 multi-frame micrographs composed of 1176 frames each in EER format] | Sauer PV, Kotecha A, Koh AF [Pubmed: 38578996] [DOI: 10.1126/sciadv.adk7535] |
6.1 TB | 1.63 - 2.2 Å |
| 2023-08-18 |  |
Mouse heavy chain apoferritin in vitreous ice after laser-melting and revitrification [12047 multi-frame micrographs composed of 553 frames each in EER format] | Bongiovanni G, Harder OF, Drabbels M, Lorenz UJ [Pubmed: 36438663] [DOI: 10.3389/fmolb.2022.1044509] |
2.2 TB | 1.63 Å |
| 2024-06-12 |  |
1.6Å Apoferritin from 200kV Glacios with Selectris Falcon 4 [4984 multi-frame micrographs composed of 371 frames each in EER format] | Koh A, Khavnekar S, Yang W, Karia D, Cats D, van der Ploeg R, Grollios F, Raschdorf O, Kotecha A, Němeček D [Pubmed: 35377368] [DOI: 10.3791/63519] |
754.4 GB | 1.635 Å |
| 2024-01-16 |  |
Single particle cryo-EM dataset of contracted cowpea chlorotic mottle virus in plunge-frozen vitrified ice [6651 multi-frame micrographs composed of 1533 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
3.4 TB | 1.64 Å |
| 2018-07-27 |  |
Human apo-ferritin reconstructed in RELION-3.0 [1255 multi-frame micrographs composed of 40 frames each in TIFF format] | Zivanov J, Nakane T, Hagen WJH, Scheres SHW [Pubmed: 30412051] [DOI: 10.7554/eLife.42166] |
191.5 GB | 1.65 Å |
| 2021-11-26 |  |
Cryo-EM reconstruction of heavy chain mouse apoferritin, 8 datasets testing dose rate and correlative double sampling mode for the Gatan K3 direct electron detector. [1143 multi-frame micrographs composed of 120 frames in LZW compressed TIFF format [multiple data sets in TIFF format] | Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA [Pubmed: 33984504] [DOI: 10.1016/j.jsb.2021.107745] |
8.5 TB | 1.655 Å |
| 2023-01-17 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 60 eps [869 multi-frame micrographs composed of 20 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
154.5 GB | 1.68 Å |
| 2020-11-13 |  |
High resolution structure of GABAAR beta3 homopentamer [multiple data sets in EER and TIFF formats] | Nakane T, Kotecha A, Sente A, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Uchański T, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW [Pubmed: 33087931] [DOI: 10.1038/s41586-020-2829-0] |
13.0 TB | 1.7 Å |
| 2025-12-17 |  |
1.7 A structure of conventional mouse heavy chain Apoferritin [935 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
370.1 GB | 1.7 Å |
| 2024-05-20 |  |
Cryo-EM of the human CAK: Data for 1.73 Å-resolution reconstruction [multiple data sets in EER format] | Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
12.1 TB | 1.7 Å |
| 2021-06-18 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 with beam-image shift of 7 um [3125 multi-frame micrographs composed of 59 frames each in TIFF format] | Efremov R, Stroobants A [Pubmed: 33950012] [DOI: 10.1107/S2059798321002151] |
695.6 GB | 1.7 Å |
| 2020-04-24 |  |
Mouse heavy-chain apoferritin movies obtained using a Talos Arctica (200 kV) equipped with a K2 [1679 multi-frame micrographs composed of 90 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
549.5 GB | 1.75 Å |
| 2025-12-18 |  |
1.8 A structure of SiO2-sealed and revitrified (210 us) mouse heavy chain Apoferritin [8398 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
2.6 TB | 1.8 Å |
| 2021-08-13 |  |
Serial electron diffraction from hen egg-white lysozyme [34 diffraction images in BIG DATA VIEWER HDF5 format] | Bücker R, Hogan-Lamarre P, Mehrabi P, Schulz EC [Pubmed: 32081905] [DOI: 10.1038/s41467-020-14793-0] |
17.7 GB | 1.8 Å |
| 2020-06-26 |  |
1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope [4949 multi-frame micrographs composed of 40 frames each in TIFF format] | Merk A, Fukumura T, Zhu X, Darling JE, Grisshammer R, Ognjenovic J, Subramaniam S [Pubmed: 32695410] [DOI: 10.1107/S2052252520006855] |
1.1 TB | 1.8 Å |
| 2023-02-28 |  |
Beta-galactosidase on EG-grid [3500 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
369.6 GB | 1.81 Å |
| 2026-01-07 |  |
Yeast 80S ribosome (ncs2 elp6 -/-) dataset 1/2 [9486 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 41429421] [DOI: 10.1101/2024.02.27.582385] |
3.6 TB | 1.81 - 3.0 Å |
| 2026-01-07 |  |
Yeast 80S ribosome (ncs2 elp6 -/-) dataset 2/2 [8583 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 41429421] [DOI: 10.1101/2024.02.27.582385] |
3.2 TB | 1.81 - 3.0 Å |
| 2026-01-07 |  |
Yeast 80S ribosome (wild type) dataset 1/2 [8595 multi-frame micrographs composed of 40 frames each in TIFF format] | Glatt S, Koziej L [Pubmed: 41429421] [DOI: 10.1101/2024.02.27.582385] |
3.2 TB | 1.81 - 3.0 Å |
| 2026-01-11 |  |
Yeast 80S ribosome (wild type) dataset 2/2 [10009 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 41429421] [DOI: 10.1101/2024.02.27.582385] |
3.5 TB | 1.81 - 3.0 Å |
| 2025-12-22 |  |
High-resolution structural analysis of the cyanobacterial photosystem I complex reveals independent incorporation of small transmembrane and cytoplasmic subunits [9999 multi-frame micrographs composed of 1386 frames each in EER format] | Charras Q, Gupta S, Tichy M, Al-Amoudi A, Lukes M, Konik P, Sobotka R, Novak P, Komenda J, Naschberger A [Pubmed: 40859630] [DOI: 10.1016/j.xplc.2025.101493] |
3.4 TB | 1.83 Å |
| 2026-02-03 |  |
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution [multiple data sets in EER format] | Yuan X, Lukeš M, Qian P, Charras Q, Smrčka T, Man P, Kovářová L, Koník P, Heilmann E, Al-Amoudi A, Sobotka R, Naschberger A [Pubmed: 41423677] [DOI: 10.1038/s41467-025-67637-0] |
10.5 TB | 1.84 - 2.05 Å |
