Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-07-01 |  |
STING mutants in detergent LMNG/CHS [multiple data sets in MRC format] | Xu P [Pubmed: 42343134] [DOI: 10.1038/s41586-026-10685-3] |
2.3 TB | 2.86 - 3.31 Å |
| 2026-07-01 |  |
Full body vEM stack of the 2-day-old Platynereis dumerilii larva [6400 multi-frame micrographs composed of 1 frames each in TIFF format] | Shahidi R | 37.1 TB | — |
| 2026-07-01 |  |
SBF-SEM analysis of atg18-mNG:loxP parasite architecture [multiple data sets in DM3 format] | Schmitz Y, Sengupta M, Schneider C, Ziesmann T, Hellmold F, Distler U, Reimer R, Matz JM [DOI: 10.64898/2026.04.14.718606] |
108.7 GB | — |
| 2026-06-30 |  |
Structural mechanism of SAM-AMP synthesis by the type III-D2 CRISPR effector complex [multiple data sets in TIFF format] | Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H | 3.6 TB | 2.6 - 2.8 Å |
| 2026-06-30 |  |
Cryo-EM single particle raw data of human apo-ferrtin data collection using continuous recording based beam image shift (CR-BIS) [33 multi-frame micrographs composed of 9198 frames each in EER format] | Yang Q, Huang XJ, Wu CL, Zeng Y, Zhang XZ [Pubmed: 42285946] [DOI: 10.1038/s41467-026-74373-6] |
117.6 GB | 1.64 Å |
| 2026-06-30 |  |
CryoEM raw movies of human nucleosome core particle in nuclear extract [6305 multi-frame micrographs composed of 50 frames each in TIFF format] | Ker DS, Pellegrini L [DOI: 10.64898/2026.06.15.732463] |
1.1 TB | 2.3 Å |
| 2026-06-30 |  |
Single particle Cryo-EM structure of the AcrBZ inner membrane transporter complex and DARPIN in Saposin A-nanodisc. [1356 multi-frame micrographs composed of 1 frames each in MRC format] | Du D, Neuberger A, Orr MW, Newman CE, Hsu PC, Samsudin F, Szewczak-Harris A, Ramos LM, Debela M, Khalid S, Storz G, Luisi BF [Pubmed: 32348749] [DOI: 10.1016/j.str.2020.03.013] |
3.1 TB | 3.2 Å |
| 2026-06-29 |  |
Apoferritin with xLPP on [492 multi-frame micrographs composed of 34 frames each in TIFF format] | Yu Y, Olshin PK [DOI: 10.64898/2026.06.05.730245] |
112.6 GB | 1.87 Å |
| 2026-06-29 |  |
Single-Particle Cryo-EM of a Nucleosome Containing a Single-Strand Break at SHL −2.8 Bound to the Human PARP2 WGR Domain [3768 multi-frame micrographs composed of 40 frames each in EER format] | Jayathilake C, Mewhinney CE, Gregory-Lott ER, Virk RK, Nair R, Yang J, Cho E, Day AG, Taylor DJ, Kim TH [Pubmed: 41819421] [DOI: 10.1016/j.jmb.2026.169753] |
2.2 TB | 3.28 - 4.64 Å |
| 2026-06-29 |  |
Single-Particle Cryo-EM of a Nucleosome Containing a Single-Strand Break at SHL −2.8 Bound to the Human PARP2 [7836 multi-frame micrographs composed of 49 frames each in TIFF format] | Jayathilake C, Mewhinney CE, Gregory-Lott ER, Virk RK, Nair R, Yang J, Cho E, Day AG, Taylor DJ, Kim TH [Pubmed: 41819421] [DOI: 10.1016/j.jmb.2026.169753] |
3.8 TB | 2.1 - 2.37 Å |
| 2026-06-29 |  |
Cryo electron micrographs of activated disease resistance protein NRC3 from Solanum lycopersicum [6150 multi-frame micrographs composed of 50 frames each in TIFF format] | Seager BA, Kamoun S, Madhuprakash J [Pubmed: 42247517] [DOI: 10.1126/sciadv.aeb1931] |
1.3 TB | 2.85 Å |
| 2026-06-29 |  |
Cryo electron micrographs of activated disease resistance protein NRC3 from Solanum lycopersicum in complex with Phytophthora infestans effector AVRcap1b [7555 multi-frame micrographs composed of 50 frames each in TIFF format] | Seager BA, Kamoun S, Madhuprakash J [Pubmed: 42247517] [DOI: 10.1126/sciadv.aeb1931] |
1.5 TB | 3.01 Å |
| 2026-06-28 |  |
Cryo-electron tomography of cryo-FIB milled ∆ponB Escherichia coli division site [61 multi-frame micrographs composed of 4 frames each in TIFF format] | Navarro PP, Vettiger A, Hadju R, Ananda VY, Lopez-Tavares A, Schmid EW, Walter JC, Loose M, Chao LH, Bernhardt TG [Pubmed: 40236067] [DOI: 10.1101/2025.04.02.646830] |
54.4 GB | — |
| 2026-06-28 |  |
Single Particle Cryo-EM Structure of Thermotoga maritima Threonylcarbamoyl Transfer Complex (TsaB2D) in Complex with Escherichia coli tRNA(THR) [multiple data sets in TIFF and MRC formats] | Swairjo MAS, Kutchuashvili AK [Pubmed: 42312490] [DOI: 10.1093/nar/gkag599] |
4.7 TB | 3.2 Å |
| 2026-06-28 |  |
Cryo-EM Structures of Methylation-dependent Cas9 [multiple data sets in MRC format] | Shu Y, Zhao Y, Li H [Pubmed: 41986708] [DOI: 10.1038/s41586-026-10384-z] |
11.1 TB | 2.2 - 2.88 Å |
| 2026-06-26 |  |
Echovirus 18 genome release in situ [41 tilt series in MRC format] | Mukhamedova LN, Plevka P, Trebichalska Z, Novacek J, Buchta D, Levdansky Y, Moravcova J, Hrebik D, Fuzik T, Tollefsrud TG, Andersen TJ | 3.8 GB | — |
| 2026-06-26 |  |
Cryo-EM structure of rat SLCO2A1 bound to fentiazac. [12155 multi-frame micrographs composed of 40 frames each in TIFF format] | Joshi C, Newstead S [Pubmed: 41862483] [DOI: 10.1038/s41467-026-70227-3] |
2.2 TB | 3.1 Å |
| 2026-06-25 |  |
In situ cryo-ET dataset of primary human T cells [multiple data sets in MRC format] | Kreysing JP, Penzo C, Lusic M, Beck M [Pubmed: 42399220] [DOI: 10.1101/2025.04.09.647790] |
332.0 GB | 6.8 - 7.4 Å |
| 2026-06-25 |  |
Cryo-EM single particle micrographs of hypomethylated 80S ribosomes [multiple data sets in EER and TIFF formats] | Zhao Y, Li H [Pubmed: 41928510] [DOI: 10.1016/j.molcel.2026.03.008] |
24.2 TB | 1.75 - 3.86 Å |
| 2026-06-24 |  |
Structure of the ribosome with elongation factor G trapped in the pretranslocation state [stack of 1341961 particles in MRC format] | Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N [Pubmed: 24324137] [DOI: 10.1073/pnas.1311423110] |
512.1 GB | 5.9 - 7.6 Å |
| 2026-06-23 |  |
Cryo-EM structure of Arabidopsis thaliana PSI-LHCI wild-type isolated using DOC based Clear-Native-PAGE method [8764 multi-frame micrographs composed of 40 frames each in TIFF format] | Kawamoto A, Seki S, Kurisu G [Pubmed: 41808182] [DOI: 10.1186/s13007-026-01513-w] |
1.2 TB | 2.18 Å |
| 2026-06-23 |  |
Electron tomography reveals perturbed inter-organellar relationship in PbSFA mutants [multiple data sets in MRC format] | Ali I, Dorner L, Chowdhury MR, Sokolowski-Adams Y, Abadzhieva E, Reich A, Wittmaack M, Sattler JM, Frischknecht F, Dvorin JD | 27.2 GB | — |
| 2026-06-23 |  |
Cryo-EM structure of rat SLCO2A1 bound to zafirlukast. [15950 multi-frame micrographs composed of 40 frames each in TIFF format] | Joshi C, Newstead SN [Pubmed: 41862483] [DOI: 10.1038/s41467-026-70227-3] |
2.7 TB | 3.2 Å |
| 2026-06-23 |  |
Cryo-EM structure of rat SLCO2A1 bound to losartan. [26341 multi-frame micrographs composed of 40 frames each in TIFF format] | Joshi C, Newstead S [Pubmed: 41862483] [DOI: 10.1038/s41467-026-70227-3] |
5.0 TB | 3.1 Å |
| 2026-06-21 |  |
Submitochondrial particles from bovine heart [34199 multi-frame micrographs composed of 50 frames each in TIFF format] | Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K [Pubmed: 41844608] [DOI: 10.1038/s41467-026-70578-x] |
10.2 TB | 2.6 Å |
