Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-01-03 |  |
C-terminal half of LRRK2 (I2020T) bound to microtubule in presence of MLi-2 kinase inhibitor [2354 multi-frame micrographs composed of 55 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
684.8 GB | 4.5 - 18.0 Å |
| 2023-01-03 |  |
C-terminal half of Leucine Rich Repeat Kinase 1 (LRRK1) [3629 multi-frame micrographs composed of 50 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
1.2 TB | 5.8 Å |
| 2026-05-19 |  |
C. acnes 70S ribosome bound to Doxycycline [3612 multi-frame micrographs composed of 40 frames each in TIFF format] | Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] |
1.7 TB | 2.4 Å |
| 2026-05-19 |  |
C. acnes 70S ribosome bound to Minocycline [5284 multi-frame micrographs composed of 40 frames each in TIFF format] | Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] |
2.5 TB | 2.5 Å |
| 2026-05-19 |  |
C. acnes 70S ribosome bound to Sarecycline [4014 multi-frame micrographs composed of 40 frames each in TIFF format] | Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] |
1.9 TB | 2.5 Å |
| 2026-03-27 |  |
C. thermocellum UvrA (K39A) in complex with DNA with a fluorescein modification and AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
1.1 TB | 3.63 Å |
| 2026-03-27 |  |
C. thermocellum UvrA (K647A) in complex with DNA with a fluorescein modification [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
2.1 TB | 4.81 Å |
| 2026-03-27 |  |
C. thermocellum UvrA [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
666.2 GB | 2.97 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
764.0 GB | 2.96 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with DNA with a fluorescein modification [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
1.2 TB | 3.14 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with DNA with a fluorescein modification and ADP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
1.4 TB | 3.87 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with DNA with a fluorescein modification and AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
2.2 TB | 3.1 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with DNA with an abasic site [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
3.1 TB | 3.84 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with DNA with an abasic site and AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
2.7 TB | 2.74 - 3.04 Å |
| 2026-03-27 |  |
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
4.0 TB | 3.1 - 3.23 Å |
| 2026-03-30 |  |
C. thermocellum UvrA-UvrB in complex with DNA with a fluorescein modification and AMPPNP [multiple data sets in TIFF and MRCS formats] | Nirwal S, Czarnocki-Cieciura M, Zajko W, Skowronek K, Szczepanowski RH, Nowotny M [Pubmed: 41381534] [DOI: 10.1038/s41467-025-67075-y] |
3.6 TB | 2.97 - 3.18 Å |
| 2022-07-12 |  |
C2-symmetric single-particle cryo-EM map of T. vaginalis FDPF3 - unaligned multi-frame micrographs [stack of 7398 particles in TIFF format] | Bell TA [Pubmed: 35780837] [DOI: 10.1016/j.jbc.2022.102210] |
1.4 TB | 6.6 - 6.8 Å |
| 2020-12-09 |  |
CARD8-CT filament [1208 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Sharif H, Fontana P, Fu TM, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
1.2 TB | 3.54 Å |
| 2022-05-10 |  |
CEM-MitoLab: a dataset of ~22K cellular EM 2D images with label maps of ~135K mitochondrial instances, for deep learning [43720 micrographs in TIFF format] | Narayan K, Conrad RW | 2.8 GB | — |
| 2022-05-20 |  |
CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |
| 2020-12-21 |  |
CEM500K - A large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning. [496544 micrographs in TIFF format] | Conrad RW, Narayan K [DOI: 10.1101/2020.12.11.421792] |
16.6 GB | — |
| 2025-07-30 |  |
CI ring of dusk state KaiC [20066 multi-frame micrographs composed of 50 frames each in EER format] | Dzimianski JV, Crosby P, Balasco Serrao VH, Partch CL | 6.7 TB | 3.21 Å |
| 2021-05-28 |  |
CLEM/FIB-SEM Imaging of T Cells after the Formation of Signaling Microclusters at the Immunological Synapse [160 micrographs in TIFF format] | Narayan K | 26.6 MB | — |
| 2022-12-19 |  |
CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM. [multiple data sets in TIFF format] | Lleti JMSL, Steyer AMS, Schwab YS | 19.7 GB | — |
| 2025-08-01 |  |
CRISPR-associated transposon post-transposition complex micrographs [19936 multi-frame micrographs composed of 765 frames each in EER format] | Tenjo-Castaño F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G [Pubmed: 38834066] [DOI: 10.1016/j.molcel.2024.05.005] |
6.9 TB | 2.3 Å |
