Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2015-02-26 |  |
VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å |
| 2022-03-15 |  |
Seven benchmark datasets of instance segmentation of mitochondria: 6 diverse volume EM + 1 TEM (100 images) datasets [multiple data sets in TIFF format] | Narayan K, Conrad RW | 4.1 GB | — |
| 2022-05-31 |  |
FIB-SEM of U2OS cell at leading edge of a wound assay, LPA stimulated, polarized [1798 multi-frame micrographs composed of 1 frames each in TIFF format] | Costa J, Pinto A, Machado P | 4.1 GB | — |
| 2024-11-20 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.2 GB | 4.7 - 7.1 Å |
| 2022-10-28 |  |
Chlamydomonas Cryo-Slice and View on Thermo Scientific Helios 5 Hydra PFIB [477 micrographs in TIFF format] | Kelley R, Khavnekar S, Wietrzynski W, Plitzko J, Kotecha A | 4.4 GB | — |
| 2025-07-08 |  |
IsoVEM: Accurate and Robust Isotropic Reconstruction for Volume Electron Microscopy Using a Video Transformer [158 micrographs in TIFF format] | He J, Zhang Y, Sun WH, Li A, Li XX, Liu GL, Yang G, Sun F | 4.4 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Saccharomyces cerevisiae [109 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
4.8 GB | — |
| 2021-03-05 |  |
Lipid Droplets as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 4.8 GB | — |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor wiskostatin [2 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.9 GB | 4.7 - 7.1 Å |
| 2025-11-13 |  |
Plasmodium berghei ookinete [1170 micrographs in TIFF format] | Henriksson S, Sandblad L, Billker O | 5.0 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — |
| 2025-01-23 |  |
In situ cryo-electron tomograms #1-#2 of human brain organoid from SOLIST procedure. [multiple data sets in MRC format] | Dung NHT, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kelebic N, Coscia F, Erdmann PS [Pubmed: 39271806] [DOI: 10.1038/s41592-024-02384-6] |
5.1 GB | — |
| 2025-01-23 |  |
In situ cryo-electron tomograms #1-#2 of native mouse corpus callosum from SOLIST procedure. [2 tilt series in MRC format] | Dung NHT, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kelebic N, Coscia F, Erdmann PS [Pubmed: 39271806] [DOI: 10.1038/s41592-024-02384-6] |
5.1 GB | — |
| 2021-04-06 |  |
CryoET dataset of T20S proteasome for testing motion-aware tilt-series alignment and 3D reconstruction [3 tilt series in MRC format] | Fernandez JJ [Pubmed: 29410148] [DOI: 10.1016/j.jsb.2018.02.001] |
5.1 GB | 9.0 Å |
| 2021-11-30 |  |
Entropy Regularized Deconvolution of Cellular Cryo-Transmission Electron Tomograms [2 tilt series in MRC format] | Croxford MW, Elbaum ME, Arigovindan M, Kam Z, Agard DA, Villa E, Sedat J [Pubmed: 34876518] [DOI: 10.1073/pnas.2108738118] |
5.2 GB | — |
| 2019-02-01 |  |
Bdellovibrio bacteriovorus electron cryotomography tilt-series acquired by fast-incremental method [1 tilt series in MRC format] | Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ [Pubmed: 30639925] [DOI: 10.1016/j.jsb.2018.12.008] |
5.2 GB | — |
| 2024-02-15 |  |
FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS) [1168 micrographs in TIFF format] | Belevich I, Schertel A, Zaversek T, Szyrynska N, Saarnio S, Jokitalo E [Pubmed: 38609529] [DOI: 10.1038/s41556-024-01381-3] |
5.2 GB | — |
| 2020-02-24 |  |
Electron energy-filtered diffraction (eEFD) of catalase 3D crystal with CRYO ARM 300 [84 micrographs in MRC format] | Yonekura K, Ishikawa T, Maki-Yonekura S [Pubmed: 30928615] [DOI: 10.1016/j.jsb.2019.03.009] |
5.3 GB | — |
| 2014-11-19 |  |
Beta-galactosidase Falcon-II micrographs plus manually selected coordinates by Richard Henderson [84 micrographs in MRC format] | Scheres SH [Pubmed: 25486611] [DOI: 10.1016/j.jsb.2014.11.010] |
5.3 GB | 4.2 Å |
| 2023-02-28 |  |
Cryo pFIB/SEM of PEG beads (test sample) [193 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.3 GB | — |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.5 GB | — |
| 2018-03-09 |  |
Apoferritin tutorial dataset for cisTEM [20 multi-frame micrographs composed of 50 frames each in MRC format] | Grant T, Rohou A, Grigorieff N [Pubmed: 29513216] [DOI: 10.7554/elife.35383] |
5.5 GB | — |
| 2022-05-31 |  |
FIB-SEM of U2OS cell at leading edge of a wound assay, non-LPA stimulated, non-polarized [998 multi-frame micrographs composed of 1 frames each in TIFF format] | Costa J, Pinto A, Machado P | 5.7 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Rhodospirillum rubrum [43 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.7 GB | — |
| 2021-04-14 |  |
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell (tilt series) [1 tilt series in MRC format] | Cuellar LK, Schaffer M, Martinez-Sanchez A, Plitzko JM, Foerster F, Engel BD [Pubmed: 28938114] [DOI: 10.1016/j.cell.2017.08.008] |
5.8 GB | — |
