Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-09-22 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract lot2 [1456 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
696.5 GB | 3.77 - 4.32 Å |
| 2021-09-22 |  |
Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot2 [1376 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
648.2 GB | 3.54 - 4.42 Å |
| 2021-09-22 |  |
Open linker DNA nucleosome reconstituted with GUB DNA [1576 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
777.0 GB | 4.52 Å |
| 2021-09-22 |  |
Closed linker DNA nucleosome reconstituted with GUB DNA [1320 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
624.4 GB | 3.77 Å |
| 2021-09-24 |  |
'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.1 TB | 5.44 Å |
| 2021-11-16 |  |
The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C: CENP-A nucleosome in complex with phosphorylated CENP-C C-terminal domain (601-864) and CENP-N N-terminal domain (1-211) [8017 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.6 TB | 4.5 - 7.8 Å |
| 2021-11-16 |  |
The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C:: CENP-A nucleosome in complex with phosphorylated CENP-C C-terminal domain(601-864) [6533 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.4 TB | 6.8 Å |
| 2021-11-16 |  |
The cryo-EM structure of the CENP-A nucleosome in complex with the phosphorylated CENP-C:: CENP-A nucleosome in complex with CENP-C motif (655-675) and CENP-N N-terminal domain (1-211) [4630 multi-frame micrographs composed of 50 frames each in TIFF format] | Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T [Pubmed: 33463726] [DOI: 10.15252/embj.2020105671] |
1.3 TB | 4.2 Å |
| 2020-09-11 |  |
Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome [719 multi-frame micrographs composed of 30 frames each in MRCS format] | Armache J-P, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar G, Cheng Y [Pubmed: 31210637] [DOI: 10.7554/eLife.46057] |
1.4 TB | 3.39 Å |
| 2025-07-10 |  |
Motion corrected micrographs [32306 multi-frame micrographs composed of 30 frames each in MRCS format] | Arni Thorlacius AT, Maksim Rulev MR, Oscar Sundberg OS, Anna Sundborger-Lunna ASL [Pubmed: 39910321] [DOI: 10.1038/s42003-025-07610-1] |
5.8 TB | 3.45 - 3.88 Å |
| 2022-06-20 |  |
Cryo-EM data used for the determination of the structures of LACV-L in 3 different states: replication initiation state, transcription capped primer active site entry state and transcription initiation state [14341 multi-frame micrographs composed of 40 frames each in TIFF format] | Arragain B, Durieux Trouilleton Q, Baudin F, Provaznik J, Azevedo N, Cusack S, Schoehn G, Malet H [Pubmed: 35173159] [DOI: 10.1038/s41467-022-28428-z] |
2.2 TB | 2.8 - 3.6 Å |
| 2022-05-24 |  |
Cryo-EM data used for the determination of LACV-L structure in transcription early-elongation state [2510 multi-frame micrographs composed of 60 frames each in TIFF format] | Arragain B, Durieux Trouilleton Q, Baudin F, Provaznik J, Azevedo N, Cusack S, Schoehn G, Malet H [Pubmed: 35173159] [DOI: 10.1038/s41467-022-28428-z] |
721.4 GB | 3.3 Å |
| 2022-01-24 |  |
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 1, frontal cortex) [22896 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Hasegawa M, Murzin AG, Kametani F, Arai M, Yoshida M, Ryskeldi-Falcon B [Pubmed: 34880495] [DOI: 10.1038/s41586-021-04199-3] |
3.9 TB | 2.59 Å |
| 2022-01-21 |  |
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 1, motor cortex) [12245 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Hasegawa M, Murzin AG, Kametani F, Arai M, Yoshida M, Ryskeldi-Falcon B [Pubmed: 34880495] [DOI: 10.1038/s41586-021-04199-3] |
2.0 TB | 2.94 Å |
| 2022-01-24 |  |
Structure of pathological TDP-43 filaments from ALS with FTLD (Individual 2, frontal cortex) [15991 multi-frame micrographs composed of 41 frames each in TIFF format] | Arseni D, Hasegawa M, Murzin AG, Kametani F, Arai M, Yoshida M, Ryskeldi-Falcon B [Pubmed: 34880495] [DOI: 10.1038/s41586-021-04199-3] |
2.9 TB | 2.94 Å |
| 2023-08-18 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 2) [33336 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
5.3 TB | 2.39 Å |
| 2023-08-18 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 3) [36507 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
5.7 TB | 2.39 Å |
| 2023-09-22 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 1) [91457 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
14.5 TB | 2.39 Å |
| 2025-06-19 |  |
Cryo-EM structure of Aquifex aeolicus RseP (wild-type) in complex with 4A9 Fab [11400 multi-frame micrographs composed of 64 frames each in TIFF format] | Asahi K, Hirose M, Aruga R, Kato T, Nogi T [Pubmed: 40009668] [DOI: 10.1126/sciadv.adu0925] |
2.7 TB | 3.95 Å |
| 2025-06-19 |  |
Cryo-EM structure of Aquifex aeolicus RseP (E18Q mutant) in complex with 4A9 Fab [15777 multi-frame micrographs composed of 66 frames each in TIFF format] | Asahi K, Hirose M, Aruga R, Kato T, Nogi T [Pubmed: 40009668] [DOI: 10.1126/sciadv.adu0925] |
3.8 TB | 3.61 Å |
| 2021-02-10 |  |
Cryo-EM structure of K+-bound hERG channel [1496 multi-frame micrographs composed of 50 frames each in TIFF format] | Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T [Pubmed: 33450182] [DOI: 10.1016/j.str.2020.12.007] |
1.4 TB | 3.9 Å |
| 2021-02-10 |  |
Cryo-EM structure of K+-bound hERG channel in the presence of astemizole [1865 multi-frame micrographs composed of 50 frames each in TIFF format] | Asai T, Adachi N, Moriya T, Kawasaki M, Suzuki K, Senda T, Murata T [Pubmed: 33450182] [DOI: 10.1016/j.str.2020.12.007] |
1.8 TB | 3.7 Å |
| 2022-06-13 |  |
Structure of bile acid transporter NTCP [multiple data sets in TIFF format] | Asami J, Shimizu T, Ohto U [Pubmed: 35580629] [DOI: 10.1038/s41586-022-04845-4] |
8.6 TB | 3.11 - 3.55 Å |
| 2022-04-06 |  |
CryoEM Structure of the, UND-PP bound, WaaL O-Antigen Ligase [2378 multi-frame micrographs composed of 50 frames each in MRC format] | Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper DI, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F [Pubmed: 35388216] [DOI: 10.1038/s41586-022-04555-x] |
477.2 GB | 3.23 Å |
| 2025-06-13 |  |
Single-particle cryo-EM dataset of the glycosyltransferase ArnC from Salmonella enterica in the apo state from Talos Arctica microscope [multiple data sets in TIFF and MRC formats] | Ashraf KU, Punetha A, Kaelber JT, Petrou VI [Pubmed: 39974898] [DOI: 10.1101/2025.01.29.634835] |
1.3 TB | 2.79 Å |
