Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-02-10 |  |
Unaligned movies for FANCD2-FANCI + DNA [5990 multi-frame micrographs composed of 50 frames each in TIFF format] | Shakeel S, Alcón P, Passmore LA [Pubmed: 32066963] [DOI: 10.1038/s41594-020-0380-1] |
1.7 TB | 4.1 Å |
| 2021-02-10 |  |
Unaligned movies for ubFANCD2-FANCI + DNA [multiple data sets in TIFF format] | Shakeel S, Alcón P, Passmore LA [Pubmed: 32066963] [DOI: 10.1038/s41594-020-0380-1] |
4.5 TB | 3.8 Å |
| 2025-07-10 |  |
Unaligned multi-frame micrographs of DNA polymerase theta helicase domain with AMP-PNP [671 multi-frame micrographs composed of 2130 frames each in EER format] | Ito F, Li Z, Khant HA, Chen XS [Pubmed: 40253368] [DOI: 10.1038/s41467-025-58441-x] |
660.2 GB | 3.5 Å |
| 2025-05-09 |  |
Unaligned multi-frame micrographs of DNA polymerase theta helicase domain, apo-form [4511 multi-frame micrographs composed of 2130 frames each in EER format] | Ito F, Li Z, Khant HA, Chen XS [Pubmed: 40253368] [DOI: 10.1038/s41467-025-58441-x] |
5.0 TB | 3.5 - 3.6 Å |
| 2025-07-03 |  |
Unaligned multi-frame micrographs of DNA polymerase theta with 3′-overhang DNA with 11-nt polyT and 6-nt MH sequence [10331 multi-frame micrographs composed of 50 frames each in MRC format] | Ito F, Li Z, Khant HA, Chen XS [Pubmed: 40253368] [DOI: 10.1038/s41467-025-58441-x] |
2.7 TB | 3.8 Å |
| 2025-05-09 |  |
Unaligned multi-frame micrographs of DNA polymerase theta with 3′-overhang DNA with 15-nt polyT [7228 multi-frame micrographs composed of 50 frames each in TIFF format] | Ito F, Li Z, Khant HA, Chen XS [Pubmed: 40253368] [DOI: 10.1038/s41467-025-58441-x] |
2.1 TB | 3.2 Å |
| 2025-05-10 |  |
Unaligned multi-frame micrographs of DNA polymerase theta with 3′-overhang DNA with 9-nt polyT and 6-nt MH sequence [10005 multi-frame micrographs composed of 50 frames each in TIFF format] | Ito F, Li Z, Khant HA, Chen XS [Pubmed: 40253368] [DOI: 10.1038/s41467-025-58441-x] |
2.7 TB | 3.1 Å |
| 2024-07-11 |  |
Unaligned multi-frame micrographs of SARS-CoV-2 Nsp15 in apo form and in complex with poly(U)-containing dsRNA [22419 multi-frame micrographs composed of 2051 frames each in EER format] | Ito F, Yang H, Zhou ZH, Chen XS [Pubmed: 38613382] [DOI: 10.1093/procel/pwae009] |
24.5 TB | 2.33 - 3.25 Å |
| 2025-01-09 |  |
Unaligned multi-frame micrographs of the mu opioid receptor bound to a nanobody antagonist NbE [5939 multi-frame micrographs composed of 44 frames each in MRC format] | Yu J, Kumar A, Zhang X, Martin C, Holsbeeck KV, Raia P, Koehl A, Laeremans T, Steyaert J, Manglik A, Ballet S, Boland A, Stoeber M [Pubmed: 38106026] [DOI: 10.1101/2023.12.06.570395] |
8.0 TB | 3.2 Å |
| 2025-07-25 |  |
Uncharacterized Q8U0N8 protein from Pyrococcus furiosus [6465 multi-frame micrographs composed of 50 frames each in EER format] | Schweke H, Pacesa M, Levin T, Goverde CA, Kumar P, Duhoo Y, Dornfeld LJ, Dubreuil B, Georgeon S, Ovchinnikov S, Woolfson DN, Correia BE, Dey S, Levy ED [Pubmed: 38325366] [DOI: 10.1016/j.cell.2024.01.022] |
4.5 TB | 2.79 Å |
| 2024-03-18 |  |
Unseeded Aβ(1-40) amyloid fibrils [4628 multi-frame micrographs composed of 918 frames each in EER format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
1.9 TB | 2.59 - 2.73 Å |
| 2016-07-06 |  |
Unsupervised single-particle deep classification via statistical manifold learning [multiple data sets in MRC format] | Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y | 28.2 GB | — |
| 2017-05-15 |  |
Untilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.2 TB | 4.2 Å |
| 2024-03-19 |  |
Unveiling the ultrastructural landscape of extracellular matrix via lift-out cryo-FIBSEM and cryo-ET [multiple data sets in TIFF and MRC formats] | Zens B., Fäßler F., Hansen J.M., Hauschild R., Datler J., Hodirnau V.V., Zheden V., Alanko J., Sixt M., Schur F.K.M. [Pubmed: 38506714] [DOI: 10.1083/jcb.202309125] |
183.0 GB | — |
| 2021-11-08 |  |
VHUT-cryo-FIB, a method to fabricate frozen-hydrated lamella of tissue specimen for in situ cryo-electron tomography [13 multi-frame micrographs composed of 30 frames each in TIFF format] | Zhang J [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
112.1 GB | 18.0 Å |
| 2016-08-15 |  |
VPP subtomogram averaging [11 class averages in MRC format] | Khoshouei M, Pfeffer S, Baumeister W, Foerster F, Danev R [Pubmed: 27235783] [DOI: 10.1016/j.jsb.2016.05.009] |
33.9 GB | 9.6 Å |
| 2023-05-22 |  |
Venous puncture wound thrombi, 1, 5, 20 min post-puncture, 100 nm XY raw images, 20 nm XY pixels every 20 micons, 3 nm wide area TEM montages at selected depth [15 multi-frame micrographs composed of 1 frames each in DM4 format] | Storrie B, Leapman RD [Pubmed: 34531522] [DOI: 10.1038/s42003-021-02615-y] |
381.2 GB | — |
| 2025-02-10 |  |
Vibrio cholerae DdmD apo complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 38870273] [DOI: 10.1126/science.adq0534] |
1.5 TB | 2.55 Å |
| 2025-02-10 |  |
Vibrio cholerae DdmD-DdmE holo complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 38870273] [DOI: 10.1126/science.adq0534] |
1.6 TB | 2.56 Å |
| 2015-02-26 |  |
VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å |
| 2016-02-04 |  |
Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and Other formats] | Khoshouei MK [Pubmed: 26817416] [DOI: 10.1038/ncomms10534] |
612.5 GB | 4.4 Å |
| 2018-01-31 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [219 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
45.9 GB | 4.6 Å |
| 2018-01-25 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [318 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
64.0 GB | 3.9 Å |
| 2018-01-26 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [435 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
89.4 GB | 4.4 Å |
| 2016-03-16 |  |
Volta phase plate in-focus dataset of T20S proteasome [158 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
50.3 GB | 3.2 Å |
