Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-12-08 | RNAP-TopoI complex on duplex scaffold [multiple data sets in TIFF and MRC formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 10.2 TB | 2.6 - 3.8 Å | |
| 2025-12-03 | GLIC in MSP1E3D1 nanodisc at pH 4.0 [14076 multi-frame micrographs composed of 1953 frames each in EER format] | Li Z, Bharambe N, Manishrao Lande K, Feddersen B, Manikkoth Balakrishna A, Biggin PC, Sahu G, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
10.2 TB | 2.74 - 3.45 Å | |
| 2024-12-12 | Cryo-EM of human CAK: Microscope comparisons [multiple data sets in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
10.2 TB | 2.0 Å | |
| 2022-01-28 | Anaplastic lymphoma kinase (ALK) extracellular fragment of ligand binding region 648-1025 in complex with AUG-alpha [multiple data sets in TIFF and MRC formats] | Reshetnyak AV, Myasnikov AG, Kalodimos CG [Pubmed: 34819673] [DOI: 10.1038/s41586-021-04140-8] |
10.2 TB | 2.27 Å | |
| 2025-01-16 | Cryo-EM of the CCT-PhLP1-Gb5 complex treated with ATP-AlFx [25457 multi-frame micrographs composed of 40 frames each in TIFF format] | Sass MI, Wang S, Mack D, Cottam SL, Shen PS, Willardson BM [Pubmed: 37852256] [DOI: 10.1016/j.molcel.2023.09.032] |
10.3 TB | 2.7 - 3.36 Å | |
| 2023-02-13 | Nudaurelia capensis omega virus maturation intermediates captured at pH5.6 (insect cell expressed VLPs) [multiple data sets in MRC format] | Castells-Graells R, Hesketh EL, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP [Pubmed: 41739563] [DOI: 10.1073/pnas.2420493123] |
10.3 TB | 4.8 Å | |
| 2024-07-19 | Cryo-ET dataset of purified SARS-CoV-2 double membrane vesicles formed by nsp3-4 [4635 tilt series in MRC format] | Huang YX, Ni T [DOI: 10.1016/s41586-024-07817-y] |
10.3 TB | — | |
| 2024-02-01 | Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes [multiple data sets in EER and MRC formats] | Foglizzo M, Burdett H, Wilson MD, Zeqiraj E [Pubmed: 37823591] [DOI: 10.1093/nar/gkad793] |
10.4 TB | 3.4 - 3.75 Å | |
| 2026-02-03 | Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution [multiple data sets in EER format] | Yuan X, Lukeš M, Qian P, Charras Q, Smrčka T, Man P, Kovářová L, Koník P, Heilmann E, Al-Amoudi A, Sobotka R, Naschberger A [Pubmed: 41423677] [DOI: 10.1038/s41467-025-67637-0] |
10.5 TB | 1.84 - 2.05 Å | |
| 2025-12-06 | CryoEM of E. coli RNA polymerase Sigma N transcription initiation intermediates [multiple data sets in TIFF, MRC and MRCS formats] | Mueller AU, Molina N, Nixon BT, Darst SA [Pubmed: 40759887] [DOI: 10.1038/s41467-025-61837-4] |
10.5 TB | 2.6 - 3.1 Å | |
| 2023-03-13 | mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.1 Spike [20892 multi-frame micrographs composed of 1568 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [Pubmed: 37018380] [DOI: 10.1371/journal.ppat.1011206] |
10.6 TB | 3.03 - 3.22 Å | |
| 2025-07-25 | Intermediate states of ATAD5-RFC incubated with PCNA for 3min [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 38871854] [DOI: 10.1038/s41594-024-01332-4] |
10.6 TB | 3.1 - 4.2 Å | |
| 2023-07-25 | Human dimeric alpha-catenin binding to F-actin [multiple data sets in MRC and TIFF formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36928388] [DOI: 10.1038/s42003-023-04610-x] |
10.6 TB | 2.7 - 2.77 Å | |
| 2025-11-19 | Single-particle cryo electron microscopy of Integrin aEb7 bound to E-cadherin EC12 [multiple data sets in TIFF, MRC and MRCS formats] | Hollis JA, Campbell MG [Pubmed: 40929264] [DOI: 10.1126/sciadv.adx9567] |
10.8 TB | 3.37 Å | |
| 2024-04-07 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
10.8 TB | 7.8 Å | |
| 2025-09-09 | Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the blocked conformation [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 40440070] [DOI: 10.1073/pnas.2507232122] |
10.8 TB | 3.81 - 3.88 Å | |
| 2025-07-12 | Cryo-EM captures early intermediate steps in dynein activation by LIS1 [12792 multi-frame micrographs composed of 50 frames each in EER format] | Nguyen KHV, Karasmanis EP, Kendrick AA, Reck-Peterson SL, Leschziner AE | 10.9 TB | 2.7 - 6.2 Å | |
| 2025-07-10 | Cryo-EM of HCoV-229E 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
10.9 TB | 6.5 Å | |
| 2019-08-30 | Cryo-EM structures of human P4-ATPase flippase [multiple data sets in TIFF format] | Hiraizumi M, Yamashita K, Nishizawa T, Nureki O [Pubmed: 31416931] [DOI: 10.1126/science.aay3353] |
11.0 TB | 2.63 - 3.42 Å | |
| 2025-05-14 | Single-particle cryo-EM of Staphylococcus aureus ribosomes inhibited by fusidic acid and fusidic acid cyclopentane [multiple data sets in EER, TIFF and MRC formats] | González-López A, Larsson DSD, Selmer M [Pubmed: 38902339] [DOI: 10.1038/s41598-024-64868-x] |
11.1 TB | 2.02 - 2.49 Å | |
| 2025-06-26 | Cryo-EM SPA dataset of stably reduced Streptococcus pneumoniae NADPH oxidase with NADH [28120 multi-frame micrographs composed of 938 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
11.1 TB | 2.36 Å | |
| 2025-07-16 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from tg-SwDI mouse mouse brain tissue containing amyloid-beta fibrils [25662 multi-frame micrographs composed of 700 frames each in EER format] | Zielinski M, Peralta Reyes FS, Gremer L, Schemmert S, Frieg B, Schäfer LU, Willuweit A, Donner L, Elvers M, Nilsson LNG, Syvänen S, Sehlin D, Ingelsson M, Willbold D, Schröder GF [Pubmed: 37973869] [DOI: 10.1038/s41593-023-01484-4] |
11.2 TB | 3.3 - 4.2 Å | |
| 2021-07-30 | Structure of human telomerase holoenzyme with bound telomeric DNA [43639 multi-frame micrographs composed of 48 frames each in TIFF format] | Ghanim GE, Fountain AJ, van Roon AM, Rangan R, Das R, Collins K, Nguyen THD [Pubmed: 33883742] [DOI: 10.1038/s41586-021-03415-4] |
11.2 TB | 3.4 - 6.6 Å | |
| 2025-01-21 | Type six secretion system exported effector 5 (Tse5) [10244 multi-frame micrographs composed of 50 frames each in EER format] | Gonzalez-Magana A, Tascon I, Altuna-Alvarez J, Velazquez C, Zabala M, Ubarretxena-Belandia I, Albesa-Jove D [Pubmed: 38016939] [DOI: 10.1038/s41467-023-43585-5] |
11.3 TB | 2.45 Å | |
| 2025-02-03 | Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV [34508 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
11.3 TB | 3.5 Å |