Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-08-26 |  |
Molecular model of a bacterial flagellar motor in situ reveals a “parts-list” of protein adaptations to increase torque [multiple data sets in MRC format] | Beeby M, Cohen EJ, Drobnič T, Nans A, Rosenthal PB [Pubmed: 40595286] [DOI: 10.1038/s41564-025-02012-9] |
10.1 TB | 7.9 - 9.36 Å |
| 2018-02-08 |  |
Tilt-series of salmonella enterica wild-type bacterial flagellar motor [1 tilt series in MRC format] | Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR [Pubmed: 26976588] [DOI: 10.1073/pnas.1518952113] |
328.0 MB | 69.4 Å |
| 2025-01-17 |  |
Cryo-EM structure of the decameric TraT surface exclusion lipoprotein from Escherichia coli (F plasmid) [8061 multi-frame micrographs composed of 40 frames each in TIFF format] | Beis K, Seddon C [DOI: 10.1101/2024.08.09.607165] |
1023.7 GB | 2.66 Å |
| 2025-01-17 |  |
Cryo-EM structure of the decameric TraT surface exclusion lipoprotein from Klebsiella pneumoniae (pKpQIL plasmid) [5558 multi-frame micrographs composed of 38 frames each in MRC format] | Beis K, Seddon C [DOI: 10.1101/2024.08.09.607165] |
6.2 TB | 2.47 Å |
| 2024-02-15 |  |
FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7) [564 reconstructed volumes in TIFF format] | Belevich I, Jokitalo E | 1.1 GB | — |
| 2024-01-16 |  |
REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis [multiple data sets in DM4 and TIFF formats] | Belevich I, Jokitalo E [Pubmed: 30995177] [DOI: 10.1091/mbc.e18-11-0698] |
8.7 GB | — |
| 2024-02-15 |  |
FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS) [1168 micrographs in TIFF format] | Belevich I, Schertel A, Zaversek T, Szyrynska N, Saarnio S, Jokitalo E [Pubmed: 38609529] [DOI: 10.1038/s41556-024-01381-3] |
5.2 GB | — |
| 2023-01-30 |  |
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer annealed duplex [2038 multi-frame micrographs composed of 36 frames each in MRC format] | Bell CE [Pubmed: 36543802] [DOI: 10.1038/s41467-022-35572-z] |
1.6 TB | 3.4 Å |
| 2023-01-16 |  |
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer single stranded DNA [1619 multi-frame micrographs composed of 45 frames each in TIFF format] | Bell CE [Pubmed: 36543802] [DOI: 10.1038/s41467-022-35572-z] |
822.3 GB | 4.5 Å |
| 2022-07-12 |  |
C2-symmetric single-particle cryo-EM map of T. vaginalis FDPF3 - unaligned multi-frame micrographs [stack of 7398 particles in TIFF format] | Bell TA [Pubmed: 35780837] [DOI: 10.1016/j.jbc.2022.102210] |
1.4 TB | 6.6 - 6.8 Å |
| 2025-10-23 |  |
3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus [multiple data sets in TIFF format] | Benoit LB, Pernet-Gallay KPG, Jouneau PHJ | 258.2 GB | — |
| 2021-06-11 |  |
Single particle cryo EM dataset of SARS-CoV-2 Spike protein with D614G substitution [10051 multi-frame micrographs composed of 32 frames each in MRC format] | Benton DJ, Wrobel AG, Rosenthal PB, Gamblin SJ [Pubmed: 33579792] [DOI: 10.1073/pnas.2022586118] |
4.5 TB | 3.5 - 4.2 Å |
| 2020-11-27 |  |
Micrograph frames from 110 internal SEMC/NYSBC test datasets used for Topaz-Denoise model generation & analysis [1000000 micrographs in MRCS format] | Bepler T, Kelley K, Noble AJ, Berger B [Pubmed: 33060581] [DOI: 10.1038/s41467-020-18952-1] |
33.9 TB | 2.9 - 12.54 Å |
| 2019-04-05 |  |
Rabbit muscle aldolase single particle cryoEM [multiple data sets in MRC format] | Bepler T, Morin A, Rapp M, Brasch J, Shapiro L, Noble AJ, Berger B [Pubmed: 31591578] [DOI: 10.1038/s41592-019-0575-8] |
1.4 TB | 3.7 - 3.92 Å |
| 2022-03-01 |  |
Helical structure of the toxin MakA from Vibrio cholera [1351 multi-frame micrographs composed of 40 frames each in TIFF format] | Berg A, Nadeem A, Uhlin BE, Wai SN, Barandun J [Pubmed: 35131030] [DOI: 10.7554/eLife.73439] |
195.8 GB | 3.65 Å |
| 2023-02-03 |  |
Cryo-electron tomography on plasma FIB lamellae of HeLa cells [6481 tilt series in EER format] | Berger C, Dumoux M, Glen T, Yee NB, Mitchels JM, Patáková Z, Darrow MC, Naismith JH, Grange M [Pubmed: 36746945] [DOI: 10.1038/s41467-023-36372-9] |
622.2 GB | 4.9 Å |
| 2025-06-13 |  |
Cryo electron tomography on xenon plasma FIB lamellae of high-pressure frozen E. coli [286 multi-frame micrographs composed of 10 frames each in EER format] | Berger C., Watson H., Naismith J. H., Dumoux M., Grange M. [Pubmed: 40055361] [DOI: 10.1038/s41467-025-57493-3] EMD-50675 EMD-50699 EMD-50700 EMD-50701 EMD-50702 EMD-50703 EMD-50676 EMD-50678 EMD-50679 EMD-50680 EMD-50681 EMD-50682 EMD-50683 EMD-50684 EMD-50685 EMD-50686 EMD-50687 EMD-50688 EMD-50689 EMD-50690 EMD-50691 EMD-50692 EMD-50693 EMD-50694 EMD-50695 EMD-50696 EMD-50697 EMD-50698 EMD-50704 EMD-50705 EMD-50706 |
2.2 TB | 4.0 - 15.8 Å |
| 2025-04-07 |  |
Micrographs of S.cerevisiae pre-60S particles (Nsa1-Tap) of usnic acid treated and untreated cells. [7595 micrographs in MRC format] | Bergler H [Pubmed: 39209816] [DOI: 10.1038/s41467-024-51754-3] |
667.2 GB | 2.6 - 3.4 Å |
| 2025-05-23 |  |
Cryo-EM structure of the 55 kDa nucleoplasmin domain of AtFKBP53 [8687 multi-frame micrographs composed of 594 frames each in EER format] | Bharambe N, Basak S [Pubmed: 40262726] [DOI: 10.1016/j.jsb.2025.108203] |
2.2 TB | 2.0 Å |
| 2025-11-18 |  |
GLIC in MSP1E3D1 nanodisc at pH 7.5 (asolectin) [5188 multi-frame micrographs composed of 40 frames each in MRC format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
1.5 TB | 3.42 Å |
| 2025-07-23 |  |
GLIC in MSP1E3D1 nanodisc at pH 5.5 [6626 multi-frame micrographs composed of 39 frames each in TIFF format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
1.6 TB | 2.7 Å |
| 2025-11-21 |  |
GLIC in MSP1E3D1 nanodisc at pH 2.5 [6449 multi-frame micrographs composed of 60 frames each in TIFF format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
3.5 TB | 2.6476 Å |
| 2015-11-19 |  |
Sub-tomogram averaging in RELION [7 class averages in MRC format] | Bharat TA, Scheres SH [Pubmed: 27685097] [DOI: 10.1038/nprot.2016.124] |
842.8 GB | 13.0 Å |
| 2018-05-02 |  |
Correlative microscopy of vitreous sections provides insights into BAR-domain organisation in situ [9 tilt series in MRC format] | Bharat TAM, Hoffmann PC, Kukulski W [Pubmed: 29681471] [DOI: 10.1016/j.str.2018.03.015] |
27.9 GB | — |
| 2020-08-25 |  |
Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation [stack of 6649 particles in MRC format] | Bhargava K, Datta PP, Kaushal PS, Keshavan P, Spremulli LL, Banavali NK [Pubmed: 32737313] [DOI: 10.1038/s41467-020-17715-2] |
753.5 GB | 2.96 - 3.96 Å |
