Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-02-03 | Single Particle Raw Images for nicotinic receptor alpha 7 in complex with epibatidine and PNU [multiple data sets in TIFF format] | Noviello CM, Hibbs RE [Pubmed: 33735609] [DOI: 10.1016/j.cell.2021.02.049] |
7.2 TB | 2.7 Å | |
| 2025-08-29 | Single particle cryoelectron microscopy of respiratory syncytial virus G ectodomain in complex with Fabs 2D10 and 3D3 [6605 multi-frame micrographs composed of 41 frames each in TIFF format] | O'Rourke S.M., Juarez M.G., Balasco Serrao V.H., DuBois R.M. [Pubmed: 40082629] [DOI: 10.1038/s41598-025-92886-w] |
7.2 TB | 7.29 Å | |
| 2024-04-12 | Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) [10381 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
7.2 TB | 2.9 Å | |
| 2024-06-18 | β2-adrenergic receptor in complex with GTP-bound G protein Gs, vitrified 17 seconds after addition of GTP [12930 multi-frame micrographs composed of 79 frames each in TIFF format] | Papasergi-Scott MM, Skiniotis G [Pubmed: 38480881] [DOI: 10.1038/s41586-024-07153-1] EMD-29985 EMD-29986 EMD-29987 EMD-29988 EMD-29989 EMD-29990 EMD-29991 EMD-29992 EMD-29993 EMD-29994 EMD-29995 EMD-29996 EMD-29997 EMD-29998 EMD-29999 EMD-40000 EMD-40001 EMD-40002 EMD-40004 EMD-40005 EMD-40009 EMD-40010 EMD-40011 EMD-40012 EMD-40013 EMD-40014 EMD-40015 EMD-40016 EMD-40017 EMD-40018 EMD-40019 EMD-40020 EMD-40021 EMD-40022 EMD-40023 EMD-40024 EMD-40025 EMD-40026 EMD-40027 EMD-40028 EMD-40156 EMD-40157 EMD-40158 EMD-40159 EMD-40160 EMD-40161 EMD-40163 EMD-40164 EMD-40165 EMD-40166 EMD-40167 EMD-40168 EMD-40169 EMD-40170 EMD-40171 EMD-40172 EMD-40173 EMD-40174 EMD-40175 EMD-40176 EMD-42408 EMD-42409 EMD-42410 EMD-42411 EMD-42412 EMD-42413 EMD-42414 EMD-42415 EMD-42416 EMD-42417 EMD-42418 EMD-42419 EMD-42420 EMD-42421 EMD-42422 EMD-42423 EMD-42424 EMD-42425 EMD-42426 EMD-42427 EMD-40136 EMD-40137 EMD-40138 EMD-40139 EMD-40140 EMD-40141 EMD-40142 EMD-40143 EMD-40144 EMD-40145 EMD-40146 EMD-40147 EMD-40148 EMD-40149 EMD-40150 EMD-40151 EMD-40152 EMD-40153 EMD-40154 EMD-40155 |
7.3 TB | 2.9 - 4.1 Å | |
| 2025-12-03 | GLIC F116A mutant in MSP1E3D1 nanodisc at pH 2.5 [11131 multi-frame micrographs composed of 1575 frames each in EER format] | Li Z, Bharambe N, Manishrao Lande K, Feddersen B, Manikkoth Balakrishna A, Biggin PC, Sahu G, Basak S [Pubmed: 41129221] [DOI: 10.1073/pnas.2512811122] |
7.3 TB | 2.14 Å | |
| 2023-09-22 | Sheared F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] |
7.3 TB | 3.3 Å | |
| 2023-05-11 | HMP1/alpha-catenin monomer [multiple data sets in TIFF and MRC formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36539037] [DOI: 10.1016/j.jbc.2022.102817] |
7.3 TB | 7.8 Å | |
| 2024-11-08 | Cryo-EM structure of the gastric proton pump [multiple data sets in TIFF format] | Abe K, Yokoshima S, Yoshimori A [Pubmed: 37726448] [DOI: 10.1038/s42003-023-05334-8] |
7.3 TB | 2.08 - 2.26 Å | |
| 2022-11-15 | Amyloid fibril from the antimicrobial peptide uperin 3.5 [multiple data sets in TIFF, MRC and MRCS formats] | Bücker R, Seuring C, Cazey C, Veith K, Garcia-Alai M, Grünewald K, Landau M [Pubmed: 35896552] [DOI: 10.1038/s41467-022-32039-z] |
7.4 TB | 3.0 Å | |
| 2023-09-22 | Short and capped F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] |
7.4 TB | 2.26 - 3.26 Å | |
| 2022-09-09 | S. cerevisiae Gea2 [multiple data sets in TIFF format] | Muccini AJ, Fromme JC [Pubmed: 36044848] [DOI: 10.1016/j.celrep.2022.111282] |
7.4 TB | 3.9 - 4.7 Å | |
| 2026-03-02 | Patient derived AD PHF with PET Ligand MK-6240 [multiple data sets in TIFF format] | Kunach P, Vaquer-Alicea J, Smith MS, Monistrol J, Hopewell R, Moquin L, Therriault J, Tissot C, Rahmouni N, Massarweh G, Soucy JP, Guiot MC, Shoichet BK, Rosa-Neto P, Diamond MI, Shahmoradian SH [Pubmed: 39353896] [DOI: 10.1038/s41467-024-52265-x] |
7.4 TB | 2.31 Å | |
| 2026-07-12 | Single-particle Cryo Electron Microscopy of Human Cytomegalovirus Protease Bound to an Inhibitory Antibody Fragment [multiple data sets in EER and MRC formats] | Zimanyi M, Hulce KR, Bohn M, Norman J, Rohweder PJ, Cheng Y, Craik CS, Detomasi TC [DOI: 10.1101/2025.10.17.683123] |
7.4 TB | 2.57 - 2.7 Å | |
| 2024-03-21 | Single particle Cryo EM of the C-terminal half LRRK2 I2020T mutant bound to GZD-824 [8386 multi-frame micrographs composed of 50 frames each in EER format] | Villagran Suarez A, Leschziner A [Pubmed: 38039358] [DOI: 10.1126/sciadv.adk6191] |
7.4 TB | 3.1 Å | |
| 2026-04-09 | Transcription co-inhibition alters drug resistance evolution and enhances Mycobacterium tuberculosis clearance from granulomas [14455 multi-frame micrographs composed of 50 frames each in TIFF format] | Barbara B, Lilic M, Campbell EA [Pubmed: 41339746] [DOI: 10.1038/s41564-025-02201-6] |
7.4 TB | 2.97 Å | |
| 2023-07-18 | Purified tails from bacteriophage T5 [3208 multi-frame micrographs composed of 40 frames each in MRC format] | Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C [Pubmed: 36961893] [DOI: 10.1126/sciadv.ade9674] |
7.5 TB | 3.45 - 4.22 Å | |
| 2026-06-09 | Cryo-EM structure of Chikungunya virus asymmetric unit with Fab IM-CKV063 [14504 multi-frame micrographs composed of 40 frames each in MRC format] | Su GCS, Galaz-Montoya JG, Pintilie GP, Jin JJ, Chiu WC | 7.5 TB | 3.5 - 4.8 Å | |
| 2024-03-26 | Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form [17529 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 37040767] [DOI: 10.1016/j.str.2023.03.010] |
7.6 TB | 3.5 Å | |
| 2020-08-18 | CryoEM structure of human CMG bound to ATPgammaS and DNA [3694 multi-frame micrographs composed of 40 frames each in MRC format] | Rzechorzek NJ, Pellegrini L [Pubmed: 32453425] [DOI: 10.1093/nar/gkaa429] |
7.7 TB | 3.29 - 3.41 Å | |
| 2026-06-11 | Single particle cryo-EM of Staphylococcus aureus YhaM D193A hexamers in complex with double-stranded substrate RNA derived from hpf mRNA [15724 multi-frame micrographs composed of 60 frames each in EER format] | Mattingly JM, Tanquary JR, Dunham CM | 7.7 TB | 3.2 - 3.5 Å | |
| 2026-04-15 | Single Particle Raw Images for nicotinic receptor alpha 7 in complex with conotoxin ImIl [13612 multi-frame micrographs composed of 50 frames each in TIFF format] | Stowell MHB, Bhattacharjee B, Noviello CM, Rahman MM, Hibbs RE [Pubmed: 41468893] [DOI: 10.1016/j.str.2025.12.003] |
7.7 TB | 3.06 Å | |
| 2026-03-23 | Ribosomal RNA modifications around the peptidyl transfer center stimulate catalytic activity and prevent the formation of alternative structures [multiple data sets in MRC and TIFF formats] | Larsson DSD, Selmer M [DOI: 10.64898/2026.03.01.708810] EMD-55349 EMD-55427 EMD-55428 EMD-55429 EMD-55430 EMD-55432 EMD-55433 EMD-55434 EMD-55435 EMD-55436 EMD-55437 EMD-55415 EMD-55467 EMD-55468 EMD-55469 EMD-55470 EMD-55471 EMD-55472 EMD-55473 EMD-55474 EMD-55475 EMD-55476 EMD-55618 EMD-55702 EMD-55703 EMD-55704 EMD-55705 EMD-55706 EMD-55707 EMD-55708 EMD-55709 EMD-55710 EMD-55711 |
7.7 TB | 1.87 - 3.07 Å | |
| 2023-10-23 | High-throughput electron tomography identifies centriole over-elongation in plasma cell disorders [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G, Goldschmidt H, Müller-Tidow C, Raab MS, John L, Seckinger A, Brobeil A, Dreger P, Tornóczky T, Pajor L, Hegenbart U, Schönland SO, Schwab Y, Krämer A [Pubmed: 37821581] [DOI: 10.1038/s41375-023-02056-y] |
7.7 TB | — | |
| 2023-07-25 | Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13 [multiple data sets in TIFF and MRC formats] | Kim SK, Dickinson MS, Finer-Moore J, Stroud RM [Pubmed: 36782050] [DOI: 10.1038/s41594-022-00918-0] |
7.7 TB | 1.94 - 3.1 Å | |
| 2025-10-21 | Single particle cryo-EM of Mycobacterium tuberculosis UvrA and UvrB complexes with DNA [21234 multi-frame micrographs composed of 40 frames each in TIFF format] | Genta M, Chaves-Sanjuan A, Miggiano R [Pubmed: 40210888] [DOI: 10.1038/s41467-025-58670-0] |
7.7 TB | 3.2 - 4.3 Å |