Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-10-17 |  |
Cryo-ET reveals the macromolecular reorganization of S. pombe mitotic chromosomes in vivo [25 tilt series in MRC format] | Cai S, Chen C, Tan ZY, Huang Y, Shi J [Pubmed: 30297429] [DOI: 10.1073/pnas.1720476115] |
35.1 GB | — |
| 2024-11-20 |  |
Cryo-EM raw movies of small circular RNAs [3360 multi-frame micrographs composed of 56 frames each in TIFF format] | Kristoffersen EL, McRae EK, Sørensen NR, Holliger P, Andersen ES [DOI: 10.1101/2024.05.14.594117] |
1.3 TB | — |
| 2025-12-07 |  |
Cryo-electron tomography of Caulobacter crescentus expressing mcherry-tagged WT-PopZ [18 tilt series in MRC format] | Lasker K, Park D, Deniz A | 55.3 GB | — |
| 2024-08-29 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [688 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
69.7 GB | — |
| 2025-12-07 |  |
Cryo-electron tomography of condensates formed by purified Caulobacter crescentus PopZ constructs [35 tilt series in MRC format] | Lasker K, Park D, Deniz A | 322.6 GB | — |
| 2026-04-27 |  |
Unbend:Local correction of beam-induced sample motion in cryo-EM images using 3D spline model [1 multi-frame micrographs composed of 30 frames each in TIFF format] | Lingli Kong XZ, Johannes Elferich JE, Ximena Zottig XZ, Nikolaus Grigorieff NG | 18.1 GB | — |
| 2024-10-25 |  |
Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation [multiple data sets in DM4 format] | Cisneros- Soberanis F, Abad MA, Medina-Pritchard B, Jeyaprakash AA, Gibcus JHG, Dekker J, Paulson JR, Xie L, Prior IA, Beckett AJ, Earnshaw WC, Samejima I, Samejima K, Pucekova N, Minry L, Goloborodko A, Abraham S | 19.0 GB | — |
| 2025-05-22 |  |
Cryo-ET dataset of dormant microsporidian spores from Encephalitozoon hellem [multiple data sets in MRCS and MRC formats] | Kelley K, Bhabha G, Potter CS, Carragher B, Noble AJ [Pubmed: 40067903] [DOI: 10.1073/pnas.2415233122] |
252.1 GB | — |
| 2026-04-27 |  |
Unbend:Local correction of beam-induced sample motion in cryo-EM images using 3D spline model [1 multi-frame micrographs composed of 30 frames each in TIFF format] | Lingli Kong XZ, Johannes Elferich JE, Ximena Zottig XZ, Nikolaus Grigorieff NG | 11.0 GB | — |
| 2026-06-26 |  |
Echovirus 18 genome release in situ [41 tilt series in MRC format] | Mukhamedova LN, Plevka P, Trebichalska Z, Novacek J, Buchta D, Levdansky Y, Moravcova J, Hrebik D, Fuzik T, Tollefsrud TG, Andersen TJ | 3.8 GB | — |
| 2026-07-01 |  |
Coordinated phase separation and phase transition underlie synaptic ribbon condensate formation and plasticity [2 multi-frame micrographs composed of 288 frames each in TIFF format] | Liu YL, Wang XW, Zheng TZ, Niu FN, Sun RS, Yang CY, Xu SX, Zhao ZZ, Shen ZS, Huang WH, Wang XW, Liu KL, Cai SC, Zhang MZ, Wei ZW [DOI: 10.15302/vita.2026.05.0033] |
7.1 GB | — |
| 2024-06-12 |  |
Cryo electron tomography of human Alzheimer's disease brain tissue [3 tilt series in MRC format] | Creekmore BC, Kixmoeller K, Black BE, Lee EB, Chang Y-W [Pubmed: 38531877] [DOI: 10.1038/s41467-024-47066-1] |
3.2 GB | — |
| 2026-05-01 |  |
Unbend:Local correction of beam-induced sample motion in cryo-EM images using 3D spline model [1 multi-frame micrographs composed of 75 frames each in TIFF format] | Lingli Kong XZ, Johannes Elferich JE, Ximena Zottig XZ, Nikolaus Grigorieff NG | 42.7 GB | — |
| 2017-12-18 |  |
CryoET of hemagglutinin single particle with spot-to-plunge time of 800ms [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
34.0 GB | — |
| 2026-07-09 |  |
Cryoprotectants-assisted plunge freezing of thick brain tissue specimens for targeted physiologically relevant cryo-imaging in situ [7 reconstructed volumes in MRC format] | Perez LP | 26.4 GB | — |
| 2017-12-15 |  |
CryoET of rabbit muscle aldolase single particle super-res [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
998.3 GB | — |
| 2022-01-12 |  |
Cryo-electron tilt series of mouse stereocilia [552 tilt series in MRC format] | Elferich J, Clark S, Ge J, Goehring A, Matsui A, Gouaux E [Pubmed: 34964715] [DOI: 10.7554/eLife.74512] |
1.9 TB | — |
| 2023-09-05 |  |
Benchmark SBF SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in DM4 and TIFF formats] | Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
39.2 GB | — |
| 2026-07-01 |  |
Full body vEM stack of the 2-day-old Platynereis dumerilii larva [6400 multi-frame micrographs composed of 1 frames each in TIFF format] | Shahidi R | 37.1 TB | — |
| 2017-12-15 |  |
CryoET of rabbit muscle aldolase single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
43.5 GB | — |
| 2026-07-01 |  |
SBF-SEM analysis of atg18-mNG:loxP parasite architecture [multiple data sets in DM3 format] | Schmitz Y, Sengupta M, Schneider C, Ziesmann T, Hellmold F, Distler U, Reimer R, Matz JM [DOI: 10.64898/2026.04.14.718606] |
108.7 GB | — |
| 2017-12-15 |  |
CryoET of glutamate dehydrogenase single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
133.1 GB | — |
| 2017-12-15 |  |
CryoET of glutamate dehydrogenase single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
37.1 GB | — |
| 2017-12-15 |  |
CryoET of glutamate dehydrogenase + 0.001% DDM single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
37.1 GB | — |
| 2023-02-28 |  |
Cryo pFIB/SEM of PEG beads (test sample) [193 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.3 GB | — |
