Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-05-20 | Cryo-EM structure of full-length ERGIC-53 in complex with MCFD2 [6345 multi-frame micrographs composed of 48 frames each in TIFF format] | Watanabe S, Inaba K [Pubmed: 38493152] [DOI: 10.1038/s41467-024-46747-1] |
1.4 TB | 2.53 - 6.76 Å | |
| 2020-09-30 | Structure of the Bacterial Ribosome at 2 Å Resolution [multiple data sets in TIFF format] | Watson ZL, Ward FR, Méheust R, Ad O, Schepartz A, Banfield JF, Cate JH [Pubmed: 32924932] [DOI: 10.7554/eLife.60482] |
2.1 TB | 1.98 Å | |
| 2025-03-20 | Cryo electron micrographs of Plastid-encoded RNA polymerase transcription elongation complex (PEP-TEC) from Sinapis alba [33330 multi-frame micrographs composed of 40 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
5.9 TB | 2.62 - 5.0 Å | |
| 2024-11-12 | Cryo electron micrographs of Plastid-encoded RNA polymerase (PEP) from Sinapis alba [21347 multi-frame micrographs composed of 50 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
4.5 TB | 2.3 - 2.9 Å | |
| 2025-01-28 | Cryo electron micrographs of disease resistance protein NRC2 from Nicotiana benthamiana [14049 multi-frame micrographs composed of 50 frames each in TIFF format] | Webster MW, Madhuprakash J, Kamoun S [DOI: 10.1101/2024.06.18.599586] |
2.7 TB | 2.9 Å | |
| 2021-11-15 | E. coli 70S-RNAP expressome complex in collided state (without NusG, 34nt intervening mRNA) [5874 multi-frame micrographs in TIFF format] [5874 multi-frame micrographs composed of 40 frames each in TIFF format] | Webster MW, Takacs M, Zhu C, Vidmar V, Eduljee A, Abdelkareem M, Weixlbaumer A [Pubmed: 32820062] [DOI: 10.1126/science.abb5036] |
1.7 TB | 3.3 Å | |
| 2022-09-09 | E. coli 70S-RNAP expressome complex in collided state (with NusG, 34nt intervening mRNA) [7712 multi-frame micrographs in TIFF format] [7712 multi-frame micrographs composed of 41 frames each in TIFF format] | Webster MW, Takacs M, Zhu C, Vidmar V, Eduljee A, Abdelkareem M, Weixlbaumer A [Pubmed: 32820062] [DOI: 10.1126/science.abb5036] |
2.3 TB | 3.5 Å | |
| 2025-03-19 | Dataset of apoferritin on HexAuFoil grids [multiple data sets in TIFF format] | Weckener M, Naylor CE | 53.4 GB | — | |
| 2023-11-07 | The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase Wzz form a complex in vivo and in vitro [2351 multi-frame micrographs composed of 20 frames each in MRC format] | Weckener M, Woodward LS, Clarke BR, Liu H, Ward PN, Le Bas A, Bhella D, Whitfield C, Naismith JH [Pubmed: 36944376] [DOI: 10.1098/rsob.220373] |
273.6 GB | 3.6 Å | |
| 2023-02-14 | Single-particle cryo–negative-stain EM dataset of the compact conformer of kinesin-1 (Kif5C/KLC1) [multiple data sets in TIFF format] | Weijman JF, Yadav SKN, Surridge KJ, Cross JA, Borucu U, Mantell J, Woolfson DN, Schaffitzel C, Dodding MP [Pubmed: 36112680] [DOI: 10.1126/sciadv.abp9660] |
1.7 TB | 29.1 Å | |
| 2020-08-06 | FIB/SEM sample dataset MCB-CLEM IV Weiner [1 multi-frame micrographs composed of 844 frames each in TIFF format] | Weiner A | 2.8 GB | — | |
| 2024-10-04 | Electron tomograms of high-pressure frozen-freeze substituted multivesicular endosomes [68 reconstructed volumes in MRC format] | Weiner E, Berryman E, Frey F, Gonzalez Solís A, Leier A, Marquez Lago T, Šarić A, Otegui MS | 66.2 GB | — | |
| 2019-09-27 | Cryo-EM structure of TMV in water [62 multi-frame micrographs composed of 20 frames each in TIFF format] | Weis F, Beckers M, von der Hocht I, Sachse C [Pubmed: 31535454] [DOI: 10.15252/embr.201948451] |
6.8 GB | 1.9 Å | |
| 2019-09-27 | Cryo-EM structure of TMV with Ca2+ at low pH [197 multi-frame micrographs composed of 40 frames each in TIFF format] | Weis F, Beckers M, von der Hocht I, Sachse C [Pubmed: 31535454] [DOI: 10.15252/embr.201948451] |
22.0 GB | 2.0 Å | |
| 2024-05-14 | Aligned tilt series of stationary phase Burkholderia thailandensis tomograms [40 tilt series in MRC format] | Welch MD, Khanna K [Pubmed: 38725941] [DOI: 10.17912/micropub.biology.001178] |
26.9 GB | — | |
| 2026-03-23 | Cryo-EM structures of alpha5beta1 integrin in complex with NeoNectin candidate 2, open and closed conformation [multiple data sets in TIFF and MRC formats] | Werther R [Pubmed: 40489013] [DOI: 10.1002/adma.202500872] |
1.1 TB | 2.97 - 3.36 Å | |
| 2026-05-20 | Cryo-EM structures of alpha5beta1 integrin in complex with NeoNectin [multiple data sets in TIFF and MRC formats] | Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG [Pubmed: 40489013] [DOI: 10.1002/adma.202500872] |
382.1 GB | 3.19 Å | |
| 2025-02-03 | Class Ia ribonucleotide reductase with mechanism-based inhibitor N3CDP [6007 multi-frame micrographs composed of 30 frames each in TIFF format] | Westmoreland DE, Drennan CL [Pubmed: 39475643] [DOI: 10.1073/pnas.2417157121] |
1.9 TB | 2.6 Å | |
| 2025-10-28 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with Glycerol [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
3.0 TB | 3.2 Å | |
| 2025-10-23 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with melarsoprol [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
1.2 TB | 3.2 Å | |
| 2025-10-27 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with pentamidine [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
957.4 GB | 3.7 Å | |
| 2026-04-16 | Cryo-EM structure of yeast Mgm101 bound to 83-mer ssDNA [multiple data sets in TIFF format] | Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] |
2.4 TB | 2.54 Å | |
| 2026-04-15 | Cryo-EM structures of yeast Mgm101 in the ring and lock-washer apo states [8199 multi-frame micrographs composed of 50 frames each in TIFF format] | Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] |
3.2 TB | 2.69 - 2.96 Å | |
| 2026-04-16 | Cryo-EM structure of yeast Mgm101 bound to duplex DNA annealing intermediate [3701 multi-frame micrographs composed of 50 frames each in TIFF format] | Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] |
1.5 TB | 2.54 - 3.16 Å | |
| 2020-11-13 | Cryo electron microscopy of RagAB from P. gingivalis solubilised in DDM [3635 multi-frame micrographs composed of 48 frames each in MRC format] | White JBR [Pubmed: 32393857] [DOI: 10.1038/s41564-020-0716-y] |
1.0 TB | 3.3 - 3.4 Å |