Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-07-06 |  |
Cryo-EM structure of the barley Yellow stripe 1 transporter [multiple data sets in TIFF format] | Yamagata A, Murata Y, Namba K, Terada T, Fukai S, Shirouzu M [Pubmed: 36424382] [DOI: 10.1038/s41467-022-34930-1] |
5.0 TB | 2.7 - 2.9 Å |
| 2022-07-18 |  |
Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex [multiple data sets in TIFF format] | Yamaguchi S, Naganuma M, Nishizawa T, Kusakizako T, Tomari Y, Nishimasu H, Nureki O [Pubmed: 35768503] [DOI: 10.1038/s41586-022-04790-2] |
1.4 TB | 3.3 Å |
| 2025-01-20 |  |
Cryo-EM structure of human TUT1 complexed with U6 snRNA [multiple data sets in TIFF format] | Yamashita S, Tomita K [DOI: 10.1093/nar/gkae1314] |
3.4 TB | 3.21 - 3.83 Å |
| 2020-09-03 |  |
ISWI-NCP complex in the ADPBeF-bound state [stack of 166165 particles in MRCS format] | Yan L, Wu H, Li X, Gao N, Chen Z [Pubmed: 30872815] [DOI: 10.1038/s41594-019-0199-9] |
41.7 GB | 3.37 Å |
| 2020-09-02 |  |
ISWI-NCP complex in the ADP-bound state [stack of 168430 particles in MRCS format] | Yan L, Wu H, Li X, Gao N, Chen Z [Pubmed: 32123390] [DOI: 10.1038/s41594-020-0388-6] |
36.2 GB | 2.9 Å |
| 2023-03-16 |  |
SBFSEM imaging of Leishmania haptomonads on the stomodeal valve in the sand fly [400 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
82.0 GB | — |
| 2023-03-17 |  |
SBFSEM imaging of Leishmania haptomonad-like cells attached to plastic [252 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
33.6 GB | — |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly [670 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
6.7 GB | — |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad-like cell attached to plastic [718 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
10.8 GB | — |
| 2022-02-28 |  |
Structural visualization of de novo initiation of RNA polymerase II transcription [multiple data sets in TIFF format] | Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colón JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K [Pubmed: 35051353] [DOI: 10.1016/j.molcel.2021.12.020] |
14.3 TB | 3.0 - 7.6 Å |
| 2020-09-02 |  |
Structural basis of redox modulation on chloroplast ATP synthase (reduced form) [2063 micrographs in MRC format] | Yang JH, Williams D, Kandiah E, Fromme P, Chiu PL [Pubmed: 32879423] [DOI: 10.1038/s42003-020-01221-8] |
109.9 GB | 3.05 - 4.34 Å |
| 2023-04-13 |  |
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2 [18846 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang K, Brunger AT [Pubmed: 36122200] [DOI: 10.1073/pnas.2210990119] |
4.6 TB | 2.22 Å |
| 2023-04-13 |  |
Structure-based design of a SARS-CoV-2 Omicron-specific inhibitor [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
13.5 TB | 2.51 Å |
| 2022-07-22 |  |
Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
32.4 TB | 2.09 - 2.52 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA [11827 multi-frame micrographs composed of 50 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.0 TB | 2.07 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum [13348 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.7 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with coenzyme A bound to the E2o domain [12202 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
4.2 TB | 2.17 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å |
| 2020-02-28 |  |
Three-Dimensional Reconstructions of Mouse Circumvallate Taste Buds Using Serial Blockface Scanning Electron Microscopy: I. Cell Types and the Apical Region of the Taste Bud [1194 multi-frame micrographs composed of 1 frames each in TIFF format] | Yang R, Dzowo YK, Wilson CE, Russell RL, Kidd GJ, Salcedo E, Lasher RS, Kinnamon JC, Finger TE [Pubmed: 31587284] [DOI: 10.1002/cne.24779] |
184.9 GB | — |
| 2022-11-14 |  |
The structure of PldA-PA3488 complex [3732 micrographs in MRC format] | Yang X, Li Z, Zhao L, She Z, Gao Z, Sui SF, Dong Y, Li Y [Pubmed: 36216841] [DOI: 10.1038/s41467-022-33690-2] |
327.7 GB | 3.05 Å |
| 2022-01-24 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with pathological aging of amyloid-β 42 filaments [1189 multi-frame micrographs composed of 48 frames each in TIFF format] | Yang Y, Arseni D, Zhang W, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew SY, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
1.0 TB | 2.8 Å |
| 2022-01-25 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with Alzheimer’s disease of amyloid-β 42 filaments [1762 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang Y, Arseni D, Zhang WJ, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew S, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
531.9 GB | 2.5 Å |
| 2022-11-11 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments [10874 multi-frame micrographs composed of 42 frames each in TIFF format] | Yang Y, Shi Y, Schweighauser M, Zhang X, Kotecha A, Murzin AG, Garringer HJ, Cullinane PW, Saito Y, Foroud T, Warner TT, Hasegawa K, Vidal R, Murayama S, Revesz T, Ghetti B, Hasegawa M, Lashley T, Scheres SHW, Goedert M [Pubmed: 36108674] [DOI: 10.1038/s41586-022-05319-3] |
1.2 TB | 2.2 Å |
| 2026-01-28 |  |
Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4 in nanodiscs [530 multi-frame micrographs composed of 32 frames each in TIFF format] | Yang YM, Qian QHW [Pubmed: 41513850] [DOI: 10.1038/s41589-025-02121-w] |
163.2 GB | 2.82 Å |
