Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-11-18 | E.coli BAM-hinge (BamA-GSGS) [7814 multi-frame micrographs composed of 48 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
1.3 TB | 4.2 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of Retron-displaced free PtuAB complex [15227 multi-frame micrographs composed of 51 frames each in TIFF format] | Wang B, Li H [DOI: 10.1038/s41594-025-01702-6] |
6.7 TB | 3.15 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of the Retron Ec78 complex [20372 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang BW, Li HL [DOI: 10.1038/s41594-025-01702-6] |
8.1 TB | 2.69 - 2.75 Å | |
| 2025-11-19 | CryoEM structure of methylmalonic acid semialdehyde dehydrogenase from Burkholderia cenocepacia at 2.38A resolution [4643 multi-frame micrographs composed of 99 frames each in TIFF format] | Abendroth J, Davies D.R., Yang M., Horanyi P.S., Lorimer D.D., Edwards T.E. | 1.8 TB | 2.38 Å | |
| 2025-10-28 | Structural Insights into De Novo Promoter Escape by Mycobacterium tuberculosis RNA Polymerase [10979 multi-frame micrographs composed of 50 frames each in TIFF format] | Brewer JJ, Campbell EA, Darst SA, Delbeau M, Bates Zoullas W | 3.0 TB | — | |
| 2025-11-16 | Single particle cryo-EM dataset of yeast SSU processome assembly intermediates [multiple data sets in TIFF and MRCS formats] | Buzovetsky OB [Pubmed: 41162712] [DOI: 10.1038/s41586-025-09688-3] |
187.0 TB | 2.65 - 5.96 Å | |
| 2026-02-10 | Micrographs of S.cerevisiae pre-60S particles (Noc2-Tap) after genetic Rpl7 depletion [11250 micrographs in MRC format] | Grundmann L, Haselbach D | 703.1 GB | 3.2 - 3.4 Å | |
| 2026-02-11 | Micrographs of S.cerevisiae pre-60S particles (Noc2-Tap) without genetic Rpl7 depletion [10272 micrographs in MRC format] | Grundmann L, Haselbach D [Pubmed: 41569156] [DOI: 10.1093/nar/gkag036] |
642.0 GB | 2.7 - 3.2 Å | |
| 2025-12-07 | Human antibody Fab MPV498 bound to hMPV B2 post-fusion F [7900 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
505.6 GB | 2.61 Å | |
| 2025-12-07 | Human antibody Fab MPV510 bound to hMPV DsCav-ES2-IPDS F protein [8000 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
4.1 TB | 2.85 Å | |
| 2025-11-18 | Human antibody Fab MPV499 bound to hMPV DsCav-ES2 [400 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
56.8 GB | 6.57 Å | |
| 2025-12-07 | Human antibody Fab MPV513 bound to hMPV DsCav-ES2 [6100 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
1.1 TB | 3.94 Å | |
| 2025-10-20 | Single particle reconstruction of LGTV TP21 strain [7111 multi-frame micrographs composed of 40 frames each in MRC format] | Bisikalo K [Pubmed: 40827915] [DOI: 10.1128/jvi.00870-25] |
4.0 TB | 3.82 Å | |
| 2025-11-13 | Cryo-electron tomography of the MTEC transition zone [multiple data sets in MRC format] | McCafferty CL, van den Hoek H, Müller A, Van der Stappen P, Righetto RD, Stearns T, Engel BD [Pubmed: 41364719] [DOI: 10.1371/journal.pbio.3003519] |
1.1 TB | — | |
| 2025-11-19 | Surface morphometrics reveals local membrane thickness variation in organellar subcompartments [multiple data sets in TIFF and MRC formats] | Medina M, Chang YT, Rahmani H, Fuentes D, Barad BA, Grotjahn DA [Pubmed: 40654968] [DOI: 10.5281/ZENODO.14984805] |
575.4 GB | 12.9 Å | |
| 2026-06-08 | Representative electron micrographs of the GAS muscle in Floxed and mLDHA KO mice. Abnormal mitochondria and sarcoplasmic reticula are indicated by white and black arrows, respectively. [7 multi-frame micrographs composed of 1 frames each in TIFF format] | Li Y, Xue LM, Wang FJ, Wang Y, Sun YJ, Niu ZM, Liu SN, Yan Y, Shen SY, Zhang KL, Nie CZP, Fan MC, Ma M, Wu YT, Yang BR, Jun Du J, Zhou B, Zhang D, Chow BKC, Zhang L, Qian HF, Chen L, Ying H, Wang L | 68.3 MB | — | |
| 2025-11-06 | Single particle cryoEM data of Mycobacterium smegmatis EtfD [11952 multi-frame micrographs composed of 30 frames each in EER format] | Courbon GM, Rubinstein JL [Pubmed: 40462971] [DOI: 10.1101/2025.05.14.654035] |
6.0 TB | 3.2 Å | |
| 2025-12-07 | Immunological and structural evaluation of the intranasally administrated CVB1 whole-virus and VLP vaccines [multiple data sets in MRC and TIFF formats] | Soppela S, Plavec Z, Grohn S, Jartti M, Oikarinen S, Laajala M, Marjomaki V, Butcher SJ, Hankaniemi MM, Mustonen I [Pubmed: 38978565] [DOI: 10.21203/rs.3.rs-4545395/v1] |
1.6 TB | 2.15 Å | |
| 2025-12-12 | 2.3 A structure of the SiO2-sealed and revitrified (150 us) E.coli 50S ribosomal subunit [11896 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
4.7 TB | 2.3 Å | |
| 2025-12-10 | 2.7 A structure of the SiO2-sealed and revitrified (300 us) E.coli 50S ribosomal subunit [13133 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.8 TB | 2.7 Å | |
| 2025-12-17 | 1.7 A structure of conventional mouse heavy chain Apoferritin [935 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
370.1 GB | 1.7 Å | |
| 2025-12-18 | 1.8 A structure of SiO2-sealed and revitrified (210 us) mouse heavy chain Apoferritin [8398 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
2.6 TB | 1.8 Å | |
| 2025-12-10 | 2.4 A structure of the SiO2-sealed and revitrified (30 us) E.coli 50S ribosomal subunit [10535 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.7 TB | 2.4 Å | |
| 2025-12-22 | Common beta cytokine complex micrographs [multiple data sets in TIFF format] | Caveney NA, Rodriguez GE, Pollmann C, Meyer T, Borowska MT, Wilson SC, Wang N, Xiang X, Householder KD, Tao P, Su LL, Saxton RA, Piehler J, Garcia KC [Pubmed: 38614096] [DOI: 10.1016/j.molcel.2024.03.023] |
9.3 TB | 3.6 - 3.8 Å | |
| 2025-10-30 | Structure of bacteriophage Sf6 at 7.26 Angstrom resolution by cryo-electron tomography and sub-tomogram averaging with 159 particles (9540 averaging units due to the icosahedral symmetry) [multiple data sets in TIFF and MRC formats] | Tang LT | 49.0 GB | 7.26 Å |